PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026992.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 630aa    MW: 69237.7 Da    PI: 4.4928
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026992.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-1359102146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W+ eEd ll +a k+lG++ W+ Ia+ +  gRt++ +k+r+ +
       Do026992.1  59 KGGWSREEDMLLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 102
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-42149IPR009057Homeodomain-like
PROSITE profilePS500904.8672849IPR017877Myb-like domain
SuperFamilySSF466897.9E-1847110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-1950107IPR009057Homeodomain-like
PROSITE profilePS5129420.10454108IPR017930Myb domain
SMARTSM007174.7E-1458106IPR001005SANT/Myb domain
PfamPF002491.2E-1159102IPR001005SANT/Myb domain
CDDcd001673.77E-1062103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MATGPDLSSS SGAAVPDAAA KKDRHIVSWS AEEDSVLRAQ IAHHGTDKWY NYLNSECKKG  60
GWSREEDMLL CEAQKLLGNR WTEIAKVVSG RTDNAVKNRF STLCKRRAKD DEPFQENGTP  120
CSNTNAKRVL TQTGCVTPGA AGSSLPIKQM SSDLKENIEP NIRLFGQEKG TEQDARQPLS  180
TISSNNQHNV NTVKSRNLVA TTTKPLLGPE QHCVKQEGNF MNKDDPKVAI LLQQADLLCS  240
LATKIKTEDT SQSMDEAWQQ LQHHLVKKED NGMSENSGSG IASLLEELDD LIVDPYESKE  300
EDEQKLREQS GQRQTDVDNE HCSGPSQASM EVTSNMAPDE MMEDHPVDNC KEVSSLCRSM  360
LSGSMEACPA SENLSNVAQD SRLQCVESTS PDLTDFDDFI IDPYESKEED EQNLREQNGQ  420
IDVHNDHSYG PSHARMEVTS DMVPDELMEA CLVDNCKEDS SLCRNVLSGS MEPCPGAEKA  480
ASENLSEVAE ESRLQCMEST SPVLRNFQTE HCGETPAPEN LNKVAEDSRL QRVEFTSPAH  540
TVLLGKAGAE TFASPKVAVV AKDSKLPSME FTSPAHTVAT FQPYADDMPT PKFTASERNF  600
LLSVLELTSP GSRPETSQQP SCKRALLNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-183710737107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026992.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680418.10.0transcription factor MYB88 isoform X2
TrEMBLA0A1E5ULK90.0A0A1E5ULK9_9POAL; Uncharacterized protein
STRINGPavir.Bb03405.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-67MYB family protein