PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026945.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 275aa    MW: 29570.2 Da    PI: 9.1911
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026945.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.44.3e-191150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n+s r  tf kRr+g++KKA+EL +LCd++++v+++++
  Do026945.1 11 IANDSTRRATFKKRRKGLMKKASELATLCDVDACVVVYGE 50
                89************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.516150IPR002100Transcription factor, MADS-box
CDDcd002668.15E-34285No hitNo description
PRINTSPR004046.6E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-25395IPR002100Transcription factor, MADS-box
PfamPF003195.6E-191150IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MARKKVTLQW IANDSTRRAT FKKRRKGLMK KASELATLCD VDACVVVYGE GEAQPEVWPD  60
VPKVAQVLAR FKAMPELDQC KKMMDMEGFL NQRIEKLKEQ LHKAQRENRE RETTILLHDA  120
VAGRRPGLVG LSVEEIASLG WMVENRIHGV RDALERLQAA GKGPQDAPAT TLQLQLPQVP  180
GLPLVPYGIG PAGHRDVQAP PPHPQAWLMD VAKAGGDLGA LVYSGFGGVR GSFGGASTSA  240
SGAADMPPPP PPPLGNMGPG FVWAAADPGL PFPPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLQWIANDSTRRATFKKRR
22125KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277161e-174KJ727716.1 Zea mays clone pUT5655 MADS transcription factor (MADS64) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791603.11e-128agamous-like MADS-box protein AGL80
TrEMBLA0A1E5ULN70.0A0A1E5ULN7_9POAL; Agamous-like MADS-box protein AGL80
STRINGGRMZM5G839969_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-37AGAMOUS-like 80