PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do026738.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 32217 Da PI: 4.6659

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do026738.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	70	123	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k Do026738.1 70 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 123 4557899**********************************************9 PP
2	HD-ZIP_I/II	126.1	1.5e-40	69	161	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal+ e ++L++++++L++e++e Do026738.1 69 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIERDFAALRARHDALRVECDALHRDKDALTAEIRE 161 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.12E-18	64	127	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.471	65	125	IPR001356	Homeobox domain
SMART	SM00389	6.0E-19	68	129	IPR001356	Homeobox domain
Pfam	PF00046	3.5E-16	70	123	IPR001356	Homeobox domain
CDD	cd00086	1.05E-16	70	126	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.9E-19	76	124	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
Pfam	PF02183	9.6E-14	125	166	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MKGPTSRGSL VISQAFTDQQ EDSCRNMERH GVDGDGTAAA ERDDVEAGAY DEEEDDDEEL 60 AGSRGGLGEK KRRLAADQVR ALERSFEVDN KLDPERKARI ARDLSLHPRQ VAVWFQNRRA 120 RWKTKQIERD FAALRARHDA LRVECDALHR DKDALTAEIR ELRDKVEKQM DVKLESPEEL 180 LPVAAGTEAA AAAVYKDGST DSDSSAVFNE EASPYSGAAF DHQHHHQAHP SFTGFTSFLA 240 SSSSLSSSFP SLYHGGSHLD QEADGFLSAT AADGFFAEEQ GIGLGSWYSG EGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	125	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do026738.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042027	0.0	BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds.
GenBank	KJ727556	0.0	KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792352.1	1e-161	homeobox-leucine zipper protein HOX8-like isoform X1
Swissprot	Q338Z7	3e-93	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	A0A1E5UM86	0.0	A0A1E5UM86_9POAL; Homeobox-leucine zipper protein HOX8
STRING	Pavir.J35191.1.p	1e-161	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-41	homeobox protein 16

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]