PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do026600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NF-YB | ||||||||
Protein Properties | Length: 119aa MW: 12768.6 Da PI: 10.4434 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 54.7 | 2.5e-17 | 56 | 118 | 8 | 70 |
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwa 70 l + n+ +m++v+P++ is ak+++++c+++ +++v++eas+++++++r+t++++d+ + Do026600.1 56 LQMPNIECLMRQVIPKDVTISSRAKQLTHDCAVKLVGLVADEASEQARAQHRRTVKPEDIKSS 118 6789*******************************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-12 | 9 | 117 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-11 | 55 | 118 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 6.2E-11 | 56 | 118 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MAKDSPQKSQ DIETMGRKPK RGARKKKGGR RNGEKQVAPA GCASSDGEGG SACAGLQMPN 60 IECLMRQVIP KDVTISSRAK QLTHDCAVKL VGLVADEASE QARAQHRRTV KPEDIKSSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do026600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822765.1 | 2e-40 | nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | Q6Z348 | 1e-21 | NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1 | ||||
TrEMBL | A0A1E5USS8 | 3e-80 | A0A1E5USS8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00694.1.p | 9e-30 | (Panicum virgatum) | ||||
STRING | Si018339m | 4e-29 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13659 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09030.1 | 8e-11 | nuclear factor Y, subunit B4 |