PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do026508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 560aa MW: 61718.9 Da PI: 5.2521 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 412 | 1.1e-126 | 250 | 467 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdl 98 p+ps++lgp calwdc rp+ gse+ dyc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lfaal akvqgk+vgip+c gaat+kspwna+elfdl Do026508.1 250 PSPSQYLGPICALWDCGRPVGGSEDSGDYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFAALIAKVQGKNVGIPVCGGAATSKSPWNAPELFDL 348 89**************************************9799******************************************************* PP VOZ 99 sllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksak 197 sllege++rewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+f+glkrsyymdpqpsss+ewhl+eyein +dalalyrle+k++d+kksak Do026508.1 349 SLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFAGLKRSYYMDPQPSSSHEWHLFEYEINASDALALYRLEYKSSDSKKSAK 447 *************************************************************************************************** PP VOZ 198 gkvskdsladlqkklgrlta 217 +k++++sl+++q++++rlta Do026508.1 448 SKLASNSLNEIQQQMVRLTA 467 ******************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 560 aa Download sequence Send to blast |
MAGDPAAGGG GAAHPASGGK GSRSSTRHRQ FRDRAKNRVD DLEEMFSGLQ SARKESRSAD 60 AAVLEEQNSQ GNNREAADPP SETLRLLQLA VAEEEDDATS KFTVPRSPLQ VPAFHQNHEQ 120 GHEQDVRMPN LEQQCEAVAG GAAPSQQSLG QGDCGEVSAV ANAMFNDQMY YIDQELSIED 180 FLHGDDYKID LPSSNEDHFN NLHGIGQLEH QQFDLPLDLP PHSYVDANNS EQNTGDVFVH 240 MSDLLTTIWP SPSQYLGPIC ALWDCGRPVG GSEDSGDYCN PYHAGLALND DGLLGTRPVM 300 RPRGIDLKDG PLFAALIAKV QGKNVGIPVC GGAATSKSPW NAPELFDLSL LEGESLREWL 360 FFDTPRRAFE SGNRKQRSLP DYNGRGWHES RKQVMKDFAG LKRSYYMDPQ PSSSHEWHLF 420 EYEINASDAL ALYRLEYKSS DSKKSAKSKL ASNSLNEIQQ QMVRLTADSP VENKRSARSK 480 PKANKETNAN VFAHVNNPSQ VNAPNAYQAA RQVNQMTFLN ENVVYGPHLP HSENVVYGPH 540 LPHGYSAEGS SFFWNPRDGT |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do026508.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT039629 | 0.0 | BT039629.1 Zea mays full-length cDNA clone ZM_BFc0035D15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961501.1 | 0.0 | transcription factor VOZ1 | ||||
TrEMBL | A0A1E5UJZ2 | 0.0 | A0A1E5UJZ2_9POAL; Transcription factor VOZ1 | ||||
STRING | Pavir.Ca01693.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-115 | vascular plant one zinc finger protein |