PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do025905.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

WRKY

Protein Properties

Length: 313aa MW: 33809.7 Da PI: 8.8775

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do025905.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.1e-31	167	225	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++ tY+geHnh Do025905.1 167 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRSDPNTFILTYTGEHNHA 225 79***********************998**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.0E-30	157	227	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-25	166	227	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	166	226	IPR003657	WRKY domain
PROSITE profile	PS50811	33.235	167	227	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	168	224	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010150	Biological Process	leaf senescence
GO:0010200	Biological Process	response to chitin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEEERCFNNW DLDAVVRLGC RRLSPPRQAD NPFAAFQPPQ PQPHKEEKAA VPAPAPEADA 60 GWRFPDPCAG GGQDGDELLR ALLAAQPPLP QPLPTPPSPS PQPPPPPQRQ QQPVDVPPRK 120 VHAAPASPLA RAHPSGRQVA GGVPRCKRRK NQVKKVVCQV PVDGSSSDVW AWRKYGQKPI 180 KGSPYPRGYY RCSSSKGCAA RKQVERSRSD PNTFILTYTG EHNHAAPTHR NSLAGTTRHK 240 LPSSASPQPP SVVVGGASAS AGDAEPQPQQ PSPSRTSRST AGLSPTTPLR SPSMEEDDEE 300 ENDELLVEDR DGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-21	150	228	2	80	Disease resistance protein RRS1
5w3x_D	2e-21	150	228	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00422	DAP	Transfer from AT4G01250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do025905.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU058618	1e-146	KU058618.1 UNVERIFIED: Panicum miliaceum WRKY13-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814242.1	1e-129	probable WRKY transcription factor 27
Swissprot	O04609	2e-49	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	A0A1E5VLE7	0.0	A0A1E5VLE7_9POAL; WRKY transcription factor 22
STRING	Si017529m	1e-117	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5358	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	1e-47	WRKY family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]