PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do025546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 27161.4 Da PI: 6.0712 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.6 | 7.6e-34 | 5 | 128 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrF Pt+eel+ +yL++k++g + ++e+vi+ +d++ ++Pw+Lp ++ ++ + s + ++a+g r++r+t sgyWka g+ v++++g+ Do025546.1 5 LAPGFRFYPTEEELLRFYLRNKLDGVRrGDIERVIPVADVCALDPWELPGTLLST--GIECISLE--REARGGRPSRTTPSGYWKAAGTPGLVYAADGR 99 579*********************9886677789***************655443..33334443..345799************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 +g+kkt+vfy+grap g kt+W ++ey+ Do025546.1 100 PIGTKKTMVFYRGRAPAGAKTKWKLNEYK 128 ****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-38 | 4 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.798 | 5 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-16 | 7 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MAELLAPGFR FYPTEEELLR FYLRNKLDGV RRGDIERVIP VADVCALDPW ELPGTLLSTG 60 IECISLEREA RGGRPSRTTP SGYWKAAGTP GLVYAADGRP IGTKKTMVFY RGRAPAGAKT 120 KWKLNEYKAL EDEDEYAAQA AAPAPTHALQ TRGEFTLCRL YTKSGCPWQF DRRPSAAAAA 180 AGGGSENAAA AVTFPNGEQT GQKRKRAAPP SDDSSSSDGD TQQLLRQRGT NEVLNDDMVD 240 WSQFLDWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-25 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-25 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-25 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-25 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-25 | 5 | 163 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-25 | 5 | 163 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do025546.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093626 | 2e-74 | FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809342.1 | 1e-120 | NAC domain-containing protein 90-like | ||||
TrEMBL | A0A1E5UZ45 | 0.0 | A0A1E5UZ45_9POAL; NAC domain-containing protein 90 | ||||
STRING | Pavir.J04751.1.p | 1e-117 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-52 | NAC domain containing protein 90 |