PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025202.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 367aa    MW: 39430.1 Da    PI: 6.9578
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025202.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.42.6e-27177236258
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                 dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r +edp + e+tY g+H++
  Do025202.1 177 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDEDPFMYEVTYCGNHTC 236
                 8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-27169236IPR003657WRKY domain
SuperFamilySSF1182901.14E-24174236IPR003657WRKY domain
SMARTSM007749.4E-38176238IPR003657WRKY domain
PfamPF031062.1E-25177236IPR003657WRKY domain
PROSITE profilePS5081121.643177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDDVLSQIHD AFRLATELMA ELPATQNEPV YLAERCHRIV QAYVAAIRML HPHGGDDVSP  60
RPPPPPPPFG GGDSSGSSHG HLQQLELLRP FLGGAPTSVP TFPQHLGRLL ESPPFISTHA  120
DAFGAGTSGG PVRRQASSSR SSPPTQPRQH RRRRESGERM TMMVPVQRTG NTDLPPDDGY  180
TWRKYGQKDI LGSRYPRSYY RCTHKNYYGC EAKKKVQRLD EDPFMYEVTY CGNHTCLTST  240
TPLLTLPAHT NAATSTAAAA TANMLTNSPT GSASILAGQD LVMAPAEHPA PALSTAIQLS  300
ISWMPSALVG PSAGEGSSAQ VSVPAASGRD TEYPVMDLAD AMFNSGSSGG SSMDAIFPAH  360
HHDYRDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20177236968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025202.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878174e-89AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809471.11e-173uncharacterized protein LOC112887503
TrEMBLA0A2T7EFG41e-180A0A2T7EFG4_9POAL; Uncharacterized protein
STRINGSi025307m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-36WRKY DNA-binding protein 55