PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025071.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 865aa    MW: 95531.8 Da    PI: 5.6523
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025071.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.35.8e-35176250276
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                 Cqv++C ad+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l++fDe+krsCrr+L++hn+rrr+k
  Do025071.1 176 CQVPECGADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHVLQDFDEDKRSCRRKLERHNKRRRRK 250
                 ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-26173237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.18173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-33174253IPR004333Transcription factor, SBP-box
PfamPF031101.1E-26176250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MDASDSGEGG AADAGEPIWD WGNLLDFVVQ DDDSLVLPWD DAAAGIGGAA DPTEAAAPLL  60
PSPLPQPVEV ELEPEPELGP VLPPPPLRVQ GIGRRVRKRD PRLVCPNYLA GRVPCACPEV  120
DEMVAAAEVE DVATEFLAGA RKKTKTAAGR RGKAGAAGGG GVAGGTVRAA AMEMKCQVPE  180
CGADIRELKG YHRRHRVCLR CAHAAAVMLD GVQKRYCQQC GKFHVLQDFD EDKRSCRRKL  240
ERHNKRRRRK PDSKGILDKE IDEQLDLSAD VSGDGELREE NMEGTTSEML ETVLSNKVLD  300
RGTPAGSEDV LSSPICTQPS LQNEQSKSVV TFAASVEACI GANQENAKLT TNSPMHDTKS  360
AYSSSVGPFF VLTKLFIYIS MYDSACPTGR ISFKLYDWNP AEFPRRLRHQ IFEWLASMPV  420
ELEGYIRPGC TILTVFVAMP QHMWDKLSDD AANLLRNLVN SPNSLLLGKG AFFIHINNMI  480
FQVLKDGATL MSTRLDVQSP RIDYVHPTWF EAGKPVELIL CGSSLDQPKF RSLLSFDGDY  540
LKHDCYRLTS HDTFNCIENG DLILDSQREI FRIDITQSRP DIHGPAFVEV ENMFGLSNFI  600
PILFGSKQLC SELERIQDAL CGSSNSNLFG ELPSASSDPC ERRKHQMAAM SEFLIDIGWL  660
IRKPTPDEFK NVLSSTNIQR WVCIMNFLIQ NDFINVLEII VKSMDNIMGS EVLSNLETGR  720
LEDHVTAFLG YVSHARNIID RRANNDEKTQ LETRWVSVCS PNQPSLGTSL PLANENTGTY  780
EEETASLVTR DVSHRHCCQP DMNARWLKRS LVVKYPGGAT RMRLGMTVVI AAVLCFTACL  840
ALFHPHGVGV LASPVKRYLS SDSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-40175255585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232250KRSCRRKLERHNKRRRRKP
2236248RRKLERHNKRRRR
3243250NKRRRRKP
4244249KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025071.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805456.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A1E5VG690.0A0A1E5VG69_9POAL; Squamosa promoter-binding-like protein 9
STRINGGRMZM2G109354_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-134squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]