PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024962.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 898aa    MW: 102065 Da    PI: 8.7221
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024962.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.2e-15601371598
                 -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +++p++f++++ g+   s t++l++++g  ++v++   k+ +++vl+ GW+ Fv+a+g++e Df++F ++++s+f   v +f+
  Do024962.1  60 SIIVPNRFLKHFAGE--LSGTIKLKSPNGSLYDVEV--VKRFNKVVLQHGWEAFVDAHGIEEHDFLLFCHIEKSCF--EVLIFD 137
                 4789*****777766..7779***************..999999***************************99999..888887 PP
2B337.73.7e-123174021099
                 HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                 + k+    ++k +a++h   ++es+ +tl+   ++++W +k+  +k+++r  +l++ W +Fv++n++ egD++++  ++  ++f+++v ++r+
  Do024962.1 317 MYKQ---AISKAYARAHF--PHESTNVTLQRpGKSKKWHLKF--CKRKDRvSMLRGQWLDFVHDNHVHEGDICLLFPTKGgRRFTFTVYLHRA 402
                 4444...599*******7..457889***995566*******..555555589********************98866555999999988876 PP
3B342.61.1e-135305943699
                 EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
          B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  +l +  ++ W+ ++ +r +++r +l +GW+ F+++ngL++gD+++F+l+++  e  ++v+++++
  Do024962.1 530 TVLLQCMNKIWKTEMVIRSGRKRWFLIGGWSTFARDNGLRVGDICLFELKKNeGELIMKVHIISR 594
                 4455567799*****9988888888888*********************9976777777777765 PP
4B348.21.9e-157328131097
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++   l++p +f++++ gk   s  + le+++g  + v++  + + +++vl++GW+ Fv+an+++e+Dfv+F+++++s+f   v ++
  Do024962.1 732 KHSMVSLIMPDRFVKRFAGK--LSGRIDLESPNGSLYVVQV--TERYSKTVLQRGWEAFVDANHIQENDFVLFRHIEKSRF--EVLIL 813
                 444456899********888..6668***************..8888899************************9998888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.07E-2043140IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1843140IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.87146139IPR003340B3 DNA binding domain
CDDcd100171.76E-1748137No hitNo description
SMARTSM010194.8E-849139IPR003340B3 DNA binding domain
PfamPF023623.9E-1360137IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-16257279IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.603305401IPR003340B3 DNA binding domain
CDDcd100175.51E-17306398No hitNo description
SuperFamilySSF1019366.87E-15308401IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-7308403IPR003340B3 DNA binding domain
PfamPF023621.2E-10310402IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-16321402IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-20493593IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-20493593IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-16498593No hitNo description
SMARTSM010191.8E-6500595IPR003340B3 DNA binding domain
PfamPF023621.5E-11517594IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152537595IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-19717818IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-20718822IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-17722814No hitNo description
PROSITE profilePS5086313.38723816IPR003340B3 DNA binding domain
SMARTSM010196.6E-9723816IPR003340B3 DNA binding domain
PfamPF023622.0E-13725813IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MFLNSNVKKY MRISVVMARS GGSRMKKPCD CCKRYLDHLD EKNQNMSCFL RRMTANYKYS  60
IIVPNRFLKH FAGELSGTIK LKSPNGSLYD VEVVKRFNKV VLQHGWEAFV DAHGIEEHDF  120
LLFCHIEKSC FEVLIFDSVG CEKFFSCAGI RNTPNFQEGS VNSFDISSSS HHETAESSGS  180
KRFVMCQKGN SCHRVKTAKM AAISSSSEES EDSPSENKSC ESDDLQTPPR ADYVLLPRSY  240
LSEAQEERVI ALIQDIQPEC TVFVAVMQKS HVEPPSPYLV RSQLDPVGWQ LTSLSINLLL  300
LAYYSWLLVK SLTSCSMYKQ AISKAYARAH FPHESTNVTL QRPGKSKKWH LKFCKRKDRV  360
SMLRGQWLDF VHDNHVHEGD ICLLFPTKGG RRFTFTVYLH RATATSCRGG ASFQRVSSCH  420
GRSRTKMASL VPIKEESTDG ENASSESDMH ESSHDSPRSD SSGPSEPPPY IVPSKSCLSQ  480
SQKNIVEEKA LAIQSEVPIF VAIMKNINVY HMVEFGTRFA APHLPHIRQT VLLQCMNKIW  540
KTEMVIRSGR KRWFLIGGWS TFARDNGLRV GDICLFELKK NEGELIMKVH IISRERFYLE  600
SIHGCGLVSD LQELGTNFYG YLDHLDEKNQ PMTYFFWRMD ANAKNSIALR FFSASSLPVG  660
ASERSTAAFP FWLKMHLDSH VKKYMRISVV MARSGGSRMK KPCECCKRYL DHLDEKNQPM  720
SCFFRLMDAN SKHSMVSLIM PDRFVKRFAG KLSGRIDLES PNGSLYVVQV TERYSKTVLQ  780
RGWEAFVDAN HIQENDFVLF RHIEKSRFEV LILDSDGCEK VFPYAGVRNT PCIQEQSLDS  840
VDISSSSCHN TTESSGSERF ARRQRSSSCH RGRTAKMAAT SSSFEESGYT VKLVEFVP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.10.0B3 domain-containing protein Os03g0619600-like isoform X1
SwissprotQ6AV221e-164Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A1E5UZ550.0A0A1E5UZ55_9POAL; B3 domain-containing protein
STRINGSi035266m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-12B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]