PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024955.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 682aa    MW: 76300.6 Da    PI: 7.2712
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024955.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1545.4e-1760155189
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHel 89 
                 +fY+ +A+++GFs+r+++++ +    +  t+r fvC + g++  +  + + k +r+r+++r+gC+a +++ +         +w+vt ++ +HnH+l
  Do024955.1  60 EFYSGFARRCGFSIRRHRTEGKdGVGRGLTRRYFVCHRAGSAPAKPLAgAPKPQRNRSSSRCGCQAFMRIGRGAaaagaPTEWRVTGFSDHHNHAL 155
                 6**************9998877355667999**********99888775778899***************998765555679************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1460155IPR004330FAR1 DNA binding domain
PfamPF105511.7E-19280371IPR018289MULE transposase domain
PROSITE profilePS509669.928555591IPR007527Zinc finger, SWIM-type
PfamPF044346.1E-9562591IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6566593IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MTPAEPSSLL ECYASGEDDA PDDTRLSPDT AASPAEEGEG NLGVGPYVGQ RFPTHDAAYE  60
FYSGFARRCG FSIRRHRTEG KDGVGRGLTR RYFVCHRAGS APAKPLAGAP KPQRNRSSSR  120
CGCQAFMRIG RGAAAAGAPT EWRVTGFSDH HNHALLGQDK VHLLPAYRVI SGADKDRILM  180
FAKSGISVQQ MMRIMELEKC VEPGNLPFTE KDVRNLIQSF RKVNHEDGES VDLLGLCKNF  240
KEKDPNFKFE FTKDANNHLQ NIAWTYAASV QSYEMFGDAV VFDTTHRLSA LDMVLGIWVG  300
LNNYGMPCFF GCVLVREENQ ESFAWALQVF LNFMNRKAPQ TILTDQIVCI KEAIEKELPS  360
TKHALCIWLI AARFPSWFNA NLRACYNDWK NEFDRLYYMD NTMAFDLGWN DMVSCYGLNG  420
NRHIASLFES RNLWALPYLR GHFSAGLTSS PAVSESINAF IQRFTRVQTC LANFIEQVSV  480
AVKDQIGEQE MRQQNVQNIS LKTASPIEGH AAAVLTPYAF SKLQDELVAS SQYESFRLEG  540
SVFLVRQHTE AVGGCSVTWN QREELISCSC QMFESSGILC RHALRVLSTL NYLQIPDLYL  600
PVRWHRIQPP PPKSFNGTPH PQGVASERMG ALQSMVSVLV TEAAKSNERM DLATHEVSVL  660
LSRIKQQPVL VHGSGENAHR LQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024955.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975704.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1E5UX490.0A0A1E5UX49_9POAL; Protein FAR1-RELATED SEQUENCE 11
STRINGSi012297m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]