PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do024232.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 303aa MW: 31067.1 Da PI: 5.5085

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do024232.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.6	2.4e-07	278	298	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 +r+rr++kNRe+A rsR+RK+ Do024232.1 278 RRQRRMIKNRESAARSRARKQ 298 79******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-5	276	298	No hit	No description
CDD	cd14707	4.14E-13	278	299	No hit	No description
PROSITE pattern	PS00036	0	281	296	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDLKDGERRG PAGPLSRQGS IYSLTFDEFQ STLGGMGGGL GKEFGSMNMD ELLRSIWTAE 60 ESQAMASASA SAAGAGAAGE DGAALQRQGS LTLPRTLSVK TVDEVWRDFV REGPPPGTAG 120 GAEPQPNRQP TLGEMTLEEF LVRAGVVRDN PAAAAMAVAA AAVPAQPVAP RPIQAVSNGA 180 SIFFGNFGGA SDAGAGAMGF APVGIEDQAM GNGLMPGVAG MAGAAVTVSP VDTSVAQLDS 240 VGKGNGDLSS PMAPVPYPFE GVIRGRRSGA GLEKVVERRQ RRMIKNRESA ARSRARKQVI 300 LLS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do024232.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037059	0.0	BT037059.1 Zea mays full-length cDNA clone ZM_BFb0153F06 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821117.1	1e-152	bZIP transcription factor TRAB1-like isoform X1
Refseq	XP_025821119.1	1e-152	bZIP transcription factor TRAB1-like isoform X3
Swissprot	Q6ZDF3	1e-112	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A1E5W3Q8	0.0	A0A1E5W3Q8_9POAL; BZIP transcription factor TRAB1
STRING	Si013904m	1e-147	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.1	4e-31	ABRE binding factor 4

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]