PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024172.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 356aa    MW: 39157.4 Da    PI: 7.4509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024172.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.51e-21148213359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 
                 Dgy+WrKYGqK+++g+ ++rsYYrCt +   gCp+k+ v+r+++ ++        +++Y geH+++
  Do024172.1 148 DGYQWRKYGQKQIEGAMYSRSYYRCTRSaeqGCPAKRTVQRNDDGEDnggaapKYTVVYMGEHTCT 213
                 9*************************988889*********99543222333357999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-23131213IPR003657WRKY domain
SuperFamilySSF1182901.44E-20141213IPR003657WRKY domain
SMARTSM007741.6E-27146214IPR003657WRKY domain
PfamPF031062.1E-23148212IPR003657WRKY domain
PROSITE profilePS5081117.546148189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTLGRQGELL AQLRELLLPS SPTSAPVVKV EESSRPLDTG HPAASCDGRR RRRRGSKRGR  60
DDKNNRGDQH EEPAAAQPHH SCKRRYVHTA GFEFYGRRVQ PSRQFLPHVS TRLTDMVGLL  120
GRRRCLCRRK KQQKSSTSSL VTSVPDFDGY QWRKYGQKQI EGAMYSRSYY RCTRSAEQGC  180
PAKRTVQRND DGEDNGGAAP KYTVVYMGEH TCTANDYLEA PVILETAAAA VPNTTSTNKI  240
RPDDDDDTIN TIAPTSSAGS CTSTTTAAGI GSPAISDDIT WSSSSSSDYV DDYDYGLFAV  300
HDSWAAPPAA ASAALQEMEN FTGPIRSPVH IAAADCWTID DQLLLQLVNE PIFCNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-13138212168OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024172.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586201e-82KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977390.18e-89probable WRKY transcription factor 58
RefseqXP_025828064.19e-89probable WRKY transcription factor 69 isoform X3
TrEMBLA0A1E5V4240.0A0A1E5V424_9POAL; Uncharacterized protein
STRINGSi010813m3e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.16e-15WRKY DNA-binding protein 54