PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 131aa MW: 14715 Da PI: 8.8311 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 15 | 67 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd s + r++lg+f+taeeAa+a+++ + +++g+ Do023969.1 15 TKYRGVRRRP-WGKYAAEIRDSSR---HgVRIWLGTFDTAEEAARAYDRSAYSMRGA 67 69********.**********432...25*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.6E-14 | 15 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-28 | 15 | 76 | No hit | No description |
SMART | SM00380 | 9.2E-34 | 16 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-23 | 16 | 75 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.815 | 16 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 16 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-12 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-12 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0010186 | Biological Process | positive regulation of cellular defense response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090332 | Biological Process | stomatal closure | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MDGDWSKDGG GGEPTKYRGV RRRPWGKYAA EIRDSSRHGV RIWLGTFDTA EEAARAYDRS 60 AYSMRGANAV LNFPEDAHVY AASRGSGSGS SSSRQQQQPG RDVIEFEYLD DEVLQEMLRN 120 HDDGNKSRKK K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-37 | 9 | 130 | 7 | 131 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00029 | PBM | Transfer from AT5G43410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023969.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727519 | 1e-112 | KJ727519.1 Zea mays clone pUT5378 AP2-EREBP transcription factor (EREB189) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008652442.1 | 2e-67 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LSX0 | 4e-37 | ERF96_ARATH; Ethylene-responsive transcription factor ERF096 | ||||
TrEMBL | A0A1E5UTY7 | 3e-91 | A0A1E5UTY7_9POAL; Ethylene-responsive transcription factor ERF096 | ||||
STRING | GRMZM2G060517_P01 | 7e-67 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 2e-37 | ERF family protein |
Publications ? help Back to Top | |||
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