PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023771.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GeBP
Protein Properties Length: 303aa    MW: 32388.4 Da    PI: 10.1876
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023771.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57346.79.2e-15106192597
      DUF573   5 rlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 +lwse De++lL G   fk++tg+ p   d+ +++e +++s+  +  +  +  K++rLK Kf++ v         + s++h++ + +l+  +W+
  Do023771.1 106 QLWSEADEVALLTGAAAFKDRTGVAPRLpDMPDLFEAIRDSLAPHLDQAKMYYKLKRLKSKFQHSVPG-------DSSTAHEHRVRDLCAALWD 192
                 69**********************98877**********************************99988.......5678888899999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.7E-14106192IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDEGAAAAAA SAAARLRPST PRSKKRSSRS KSRARSRDRR RSPNPNPSSH REPISAAPSR  60
KSDRRPKPRY IPDSATLATA LAPAAAAAAA AAAAAAAPSS GARGGQLWSE ADEVALLTGA  120
AAFKDRTGVA PRLPDMPDLF EAIRDSLAPH LDQAKMYYKL KRLKSKFQHS VPGDSSTAHE  180
HRVRDLCAAL WDAEPARPVE NDVAEAEEDA DADGGFTGGE REGAARLPMV KEVLGEYWRS  240
NGQGLSGVSL EKGLALLGSQ EASAAEVKWR RQLEADMRMQ MRRHDLGKEV YGLLIDAIKG  300
LGP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023771.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964913.11e-148probable transcription factor At1g66420
TrEMBLA0A1E5W5R90.0A0A1E5W5R9_9POAL; Uncharacterized protein
STRINGSi006601m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.11e-08DNA-binding storekeeper protein-related transcriptional regulator