PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 85aa MW: 9180.74 Da PI: 10.1252 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.6 | 1.2e-10 | 23 | 62 | 1 | 41 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41 lp GfrF+Ptdeel+ +yL++k+ + +l++ +i+++d+ Do023544.1 23 LPIGFRFRPTDEELLLHYLRRKALACPLPT-GIIPDADLAC 62 799************************999.8899999864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-14 | 10 | 64 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.961 | 23 | 85 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-6 | 24 | 46 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MEGRSGGAWH MLQGPAGVPV AGLPIGFRFR PTDEELLLHY LRRKALACPL PTGIIPDADL 60 ACLPSLKNLA HEAAVERRGR RGVKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023544.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 2e-53 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817662.1 | 5e-29 | NAC domain-containing protein 83-like isoform X1 | ||||
Refseq | XP_025817663.1 | 4e-29 | NAC domain-containing protein 10-like isoform X2 | ||||
TrEMBL | A0A1E5WKI8 | 2e-54 | A0A1E5WKI8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb03721.1.p | 3e-29 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 9e-14 | NAC domain containing protein 47 |