PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023186.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 282aa    MW: 30980.6 Da    PI: 8.4957
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023186.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.21.1e-2191451128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLp.kkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevl 93 
                 lppG+rF+Pt eelv +yL +++ g++  +  +i e d      ++Pw+L  ++ +++++e yfF++ +++     g r+ r+   ++W   g+++   
  Do023186.1   9 LPPGVRFDPTGEELVEFYLLPRALGRPPAVPGIIIEDDaatTSAHHPWKLLtRHRRTDDDEAYFFHRIASSDDakGGARQDRSC-GSRWTWVGQKRCPD 106
                 79*************************888777544442226678*****74455667789*****977665522578999964.58899888866443 PP

         NAM  94 sk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +      ++++ + k  L + +g+ ++g +t Wvm+ey++
  Do023186.1 107 EVlplngGKQVSWRKCALNLQEGSGKSG-STGWVMNEYTV 145
                 3344564555566777899999999887.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-263159IPR003441NAC domain
PROSITE profilePS5100525.4849162IPR003441NAC domain
PfamPF023653.8E-1410144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSAAEALGLP PGVRFDPTGE ELVEFYLLPR ALGRPPAVPG IIIEDDAATT SAHHPWKLLT  60
RHRRTDDDEA YFFHRIASSD DAKGGARQDR SCGSRWTWVG QKRCPDEVLP LNGGKQVSWR  120
KCALNLQEGS GKSGSTGWVM NEYTVGSTQC PFPVKLCHVS FTGHGQKRQR VPDGEGEGQD  180
LEPQAAPPQH KRTTTASSVI TTDQDLGEAR AKDQEQQFLN YGTSSVGISG AQTPDLAKNH  240
PSWILGTLTP DQASKSPLSW IKNSLRIKHV SQISHKNRSP WR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023186.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952258.15e-45uncharacterized protein LOC101779761
RefseqXP_004954806.12e-46NAC domain-containing protein 48
TrEMBLA0A1E5VFJ60.0A0A1E5VFJ6_9POAL; Uncharacterized protein
STRINGSi019916m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-12NAC domain containing protein 50