PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023080.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 132aa    MW: 15042.1 Da    PI: 10.2354
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023080.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.22e-14249350
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                e++r rrk++NRe+ArrsR++K++ ++ L+  vk+L+ +Nk+L   l+
  Do023080.1  2 ERRRKRRKESNRESARRSRLKKQQHLDDLTSQVKQLKDQNKQLSMALS 49
                5799***************************************96665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-10164IPR004827Basic-leucine zipper domain
PfamPF001709.6E-12248IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.944265IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-11459No hitNo description
SuperFamilySSF579591.31E-11456No hitNo description
PROSITE patternPS000360722IPR004827Basic-leucine zipper domain
CDDcd147022.52E-151153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MERRRKRRKE SNRESARRSR LKKQQHLDDL TSQVKQLKDQ NKQLSMALSI TSQNLVAVQA  60
QNSVMQTQKM ELDSRLGALT EILCYMNAIT STSTSAPTNP AMVNNITSSS AYYLLGASCT  120
WNHQPIDLYQ CF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128RRRKRRK
229RRRKRRKE
349RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670531e-100BT067053.1 Zea mays full-length cDNA clone ZM_BFb0173J02 mRNA, complete cds.
GenBankKJ7275581e-100KJ727558.1 Zea mays clone pUT5418 bZIP transcription factor (bZIP9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956521.12e-78bZIP transcription factor 44
TrEMBLA0A1E5VAT99e-93A0A1E5VAT9_9POAL; Uncharacterized protein
STRINGPavir.Ba02250.1.p3e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-15basic leucine-zipper 44