PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do022863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 333aa MW: 36465.7 Da PI: 7.7308 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 100.6 | 2.4e-31 | 116 | 327 | 155 | 374 |
GRAS 155 keeleetgerLakfAeelgvpfefnvl..vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 l++ +e L++ +l+vpf fnv+ + +r++ ++ +L +++g al++++ lqlhrl ++ ++++ +qea hn+ Do022863.1 116 DSFLSRAAELLTQEVVRLDVPFVFNVVrsHIDRFSGSDIAALGIEHGQALVISSTLQLHRLIADVITTTN----------------TATQHQEAHHNGL 198 5567888999****************98778899999************************955555555................34679******** PP GRAS 252 sFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348 s+ +r+ +a+ yys+lf+ l ++ +es +r+ +Er +l++ei+++va ga+rrerhe++ +W r+ ++GFk +p s + ++ l+ + + +d Do022863.1 199 SLWNRVNNAFGYYSVLFNDLeVCGVLPESANRRAIERLVLREEIMDIVARDGAARRERHEKVVRWVPRMLHCGFKLAPASMDGFMETTKLVDRLSdNDK 297 ********************545789999*************************************************************999995554 PP GRAS 349 ....yrveeesgslvlgWkdrpLvsvSaWr 374 yrv++e+g ++ + ++ p++svS+W+ Do022863.1 298 lkphYRVQKENGFFFVYSSSTPMFSVSVWK 327 7888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.316 | 1 | 302 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.2E-29 | 116 | 327 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MASPVSNNKG KAVLKEVAVV EDVMPPPAVF VQGHGTSVPL EVGSTSSAPD RAPMEGAPTE 60 VGHPAMAAPV IHPRSMSHQL NKAPIFQVRS IMKNCIAALV NGNIVGANSA LACEQDSFLS 120 RAAELLTQEV VRLDVPFVFN VVRSHIDRFS GSDIAALGIE HGQALVISST LQLHRLIADV 180 ITTTNTATQH QEAHHNGLSL WNRVNNAFGY YSVLFNDLEV CGVLPESANR RAIERLVLRE 240 EIMDIVARDG AARRERHEKV VRWVPRMLHC GFKLAPASMD GFMETTKLVD RLSDNDKLKP 300 HYRVQKENGF FFVYSSSTPM FSVSVWKPAG NQG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do022863.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020395710.2 | 5e-80 | scarecrow-like protein 3 | ||||
TrEMBL | A0A1E5WA07 | 0.0 | A0A1E5WA07_9POAL; Uncharacterized protein | ||||
STRING | GRMZM5G889326_P01 | 2e-79 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13716 | 13 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-21 | RGA-like 2 |