PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022479.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 479aa    MW: 52043.1 Da    PI: 6.026
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022479.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.28.7e-24178227151
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ
  Do022479.1 178 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQ 227
                 6799*****************.****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.135175234IPR017930Myb domain
SuperFamilySSF466895.55E-15176227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-22176227IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-23178227IPR006447Myb domain, plants
PfamPF002494.1E-6181227IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLAVVSPVRC ADAEEFSGGA GTEMEEIGPV SDLDFDFTVD DIDFGDFFLR LEDGDALPDL  60
EVDPTEIFTD FEAIANGGDG VTDQEVPTVQ PLADAVHLDP VDPCSGVLAE ENTTHALVEE  120
GKIECNHGEE VAAGNNGDFG GSRGTVLAEK SPSSTTSSSQ EAENRHKSSS KHSQGKKKAK  180
VDWTPELHRR FVQAVEQLGI DKAVPSRILE IMGIDSLTRH NIASHLQWDL LLTIKSKKRS  240
VCVNNLLCKL VQKYRSHRKH MLAREAEAAS WTQRRQMYAA RGAPAAVKRP DSNAWTVPTI  300
GFPPPPPPPP PHPMQHFSRP LHVWGHPTPA VESPRVPMWP RHLVPRAPTP PWAPPLSDPA  360
FWHHPYMRGP AHMPGQVAPC VAVPMPAARF PAPPVRGILP CPPPMYRPLV PPALTSKSQQ  420
DTQLQLQTQP SSESIDAAIG DVISKPWLPL PLGLKPPSVD SVMGELQRQG VADVPPACG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14175227254ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022479.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812542.10.0probable transcription factor GLK1
SwissprotQ5Z5I41e-164GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A1E5VSE80.0A0A1E5VSE8_9POAL; Putative transcription factor GLK1
STRINGPavir.Db01285.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-51GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]