PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do022252.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 642aa MW: 71109.6 Da PI: 4.7328

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do022252.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.3e-10	230	270	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Do022252.1 230 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 270 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.799	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-13	224	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-12	225	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-11	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.96E-11	229	274	No hit	No description
Pfam	PF00010	1.1E-7	230	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010311	Biological Process	lateral root formation
GO:0034227	Biological Process	tRNA thio-modification
GO:0016783	Molecular Function	sulfurtransferase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MEAGGLITEV GWTEFDFLSH GEESEVMAQL LGAFPSHGEE VLQELPWSNQ ASNVFSDNIG 60 SSLAVPPAYE GYYLSNSNEA LRISSCIAPD DLSSVQQYGP TEFFNKFSNH SLNFYGNGDR 120 SCEDLDDPSM SMLDSVSATN KRKQLAEELD GQTRGRKCAR KGEIKRTKRA KQRGDEDASM 180 AIASGSPTSC CTSESDSNAS LESADADARP KGKARAACGA TTEPQSIYAR KRRERINERL 240 KILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIRLLSSDD MWMVALQFIH EMQSKAIQSW 300 ETSNSQAQPA FGVGVAFVDE SVLLARAEHE TETATEDIKS IVSSLSPGDK QVHVAPLEDA 360 FSCGSEDKAA RLKEVVSMIN DETGRDDFIR CLRMLSLQKI ALENGYTKIM LGTCASGIAC 420 HVLSATVKGQ GYSLPADVQY VDTRWEVPVV LPLHDCLAQE LSLLCELDSL KTQQLLDRPC 480 SGINSLVASF VSRLREENPS REHTILRTAQ KLKPFSFNKF SANGYHDFLP SRLRPKFQNV 540 DTNESTFSEI LCLICGSPFS ESELQNLENT KHKAQNKIDL YTAHCCQSCH FQILPAATDT 600 NEHFLSLLPK FWTEKVDTAS ASHSSLRDQI EDCLLEDDDD EN

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MEAGGLITEV GWTEFDFLSH GEESEVMAQL LGAFPSHGEE VLQELPWSNQ ASNVFSDNIG  60
SSLAVPPAYE GYYLSNSNEA LRISSCIAPD DLSSVQQYGP TEFFNKFSNH SLNFYGNGDR  120
SCEDLDDPSM SMLDSVSATN KRKQLAEELD GQTRGRKCAR KGEIKRTKRA KQRGDEDASM  180
AIASGSPTSC CTSESDSNAS LESADADARP KGKARAACGA TTEPQSIYAR KRRERINERL  240
KILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIRLLSSDD MWMVALQFIH EMQSKAIQSW  300
ETSNSQAQPA FGVGVAFVDE SVLLARAEHE TETATEDIKS IVSSLSPGDK QVHVAPLEDA  360
FSCGSEDKAA RLKEVVSMIN DETGRDDFIR CLRMLSLQKI ALENGYTKIM LGTCASGIAC  420
HVLSATVKGQ GYSLPADVQY VDTRWEVPVV LPLHDCLAQE LSLLCELDSL KTQQLLDRPC  480
SGINSLVASF VSRLREENPS REHTILRTAQ KLKPFSFNKF SANGYHDFLP SRLRPKFQNV  540
DTNESTFSEI LCLICGSPFS ESELQNLENT KHKAQNKIDL YTAHCCQSCH FQILPAATDT  600
NEHFLSLLPK FWTEKVDTAS ASHSSLRDQI EDCLLEDDDD EN

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6/CTU1 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. {ECO:0000255\|HAMAP-Rule:MF_03054}.
UniProt	Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6/CTU1 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. {ECO:0000255\|HAMAP-Rule:MF_03054}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do022252.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU964765	0.0	EU964765.1 Zea mays clone 281436 hypothetical protein mRNA, complete cds.
GenBank	EU969383	0.0	EU969383.1 Zea mays clone 329498 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963030.2	0.0	cytoplasmic tRNA 2-thiolation protein 2
Swissprot	A2ZM73	0.0	CTU2_ORYSI; Cytoplasmic tRNA 2-thiolation protein 2
Swissprot	Q2QMW0	0.0	CTU2_ORYSJ; Cytoplasmic tRNA 2-thiolation protein 2
TrEMBL	A0A1E5WEK9	0.0	A0A1E5WEK9_9POAL; Cytoplasmic tRNA 2-thiolation protein 2
STRING	Si021986m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	1e-39	ROOT HAIR DEFECTIVE 6-LIKE 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]