PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do021977.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

WRKY

Protein Properties

Length: 308aa MW: 32730.4 Da PI: 10.1261

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do021977.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.5	7.4e-30	231	288	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +p ++++tYeg+H+h+ Do021977.1 231 DDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGEPAMLIVTYEGDHRHD 288 99*********************9888**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.2E-15	181	227	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.9E-31	217	288	IPR003657	WRKY domain
PROSITE profile	PS50811	30.262	224	290	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-25	225	288	IPR003657	WRKY domain
SMART	SM00774	2.9E-34	229	289	IPR003657	WRKY domain
Pfam	PF03106	4.0E-25	231	287	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MITIDDLMSF GGDSGGGVPP VTAGDDGQAT PRRQMMAMGG DHQLTVSRIR TAVSMLGRRT 60 GHARFRRGPV VAEVDHPSSS ADQQQQQPSG RAAAVEALGF AKGCEAAFSA SASGASSSLP 120 STTLTSLTAG EGSVSNGRVH GHFPPVMSGH AAGRPLPPAM SMPQPAASDY YTSGAARRNN 180 NKCHDRARSE NDAGGKAHAG RCHCSKKRKS RERRTVRMPA ISSRNADIPP DDYSWRKYGQ 240 KPIKGSPYPR GYYKCSTVRG CPARKHVERD PGEPAMLIVT YEGDHRHDGQ QDRGAAAAQP 300 EHTTTTSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-20	227	288	12	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269\|PubMed:16623886}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do021977.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269\|PubMed:15618416, ECO:0000269\|PubMed:16623886}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094685	1e-103	FP094685.1 Phyllostachys edulis cDNA clone: bphyem111b06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952436.1	1e-129	WRKY transcription factor WRKY51
Swissprot	Q0JEE2	3e-67	WRK51_ORYSJ; WRKY transcription factor WRKY51
TrEMBL	A0A1E5V1I5	0.0	A0A1E5V1I5_9POAL; Putative WRKY transcription factor 11
STRING	Si017889m	1e-128	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP617	38	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	4e-54	WRKY DNA-binding protein 11

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y,Wang L The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] Wu KL,Guo ZJ,Wang HH,Li J The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] Xie Z, et al. Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Plant J., 2006. 46(2): p. 231-42 [PMID:16623886] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Zhang ZL, et al. A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells. Plant Mol. Biol., 2009. 70(1-2): p. 139-51 [PMID:19199048] Hwang SH, et al. OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae. Plant Cell Rep., 2016. 35(9): p. 1975-85 [PMID:27300023]