PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do021930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WOX | ||||||||
Protein Properties | Length: 263aa MW: 27729.5 Da PI: 8.0618 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.5e-20 | 21 | 80 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Do021930.1 21 TRWCPTPEQLMILEEMYRGgLRTPNASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 80 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 118.3 | 3.5e-38 | 20 | 81 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+PtpeQ++iLee+y+ GlrtPn+++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk Do021930.1 20 STRWCPTPEQLMILEEMYRGGLRTPNASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 81 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.6E-4 | 18 | 85 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.7E-18 | 21 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.32E-5 | 21 | 81 | No hit | No description |
SuperFamily | SSF46689 | 1.67E-10 | 21 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-7 | 22 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.766 | 26 | 81 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MPSQQGQPQP QPQQPVVAGS TRWCPTPEQL MILEEMYRGG LRTPNASQIQ QITAHLACYG 60 RIEGKNVFYW FQNHKARDRQ KLRRRLCMSH HLLSCAQYYA AHQGHGFLAA PPPAPYGCSV 120 FDQAAGQLLS PTSPTPAAAA AAAAAAAYGY YYPGTTAFAA APATRCAGAA TPPSPTQLLH 180 YQAGGGGGGG IAAVEALGRP EYSLGKLNNF GVALDDVVMS SAAAVDMGPP GFEVAPPPVA 240 FCRPLKTLDL FPGGLKEEQH DVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do021930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040184 | 1e-128 | BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds. | |||
GenBank | KJ726946 | 1e-128 | KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809937.1 | 1e-132 | putative WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A1E5VXX1 | 0.0 | A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2 | ||||
STRING | Pavir.J22602.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 5e-41 | WOX family protein |