PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021902.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 277aa    MW: 30545 Da    PI: 8.4963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021902.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+  ++++G  +W++I++  g+ R++k+c++rw +yl
       Do021902.1 16 KGLWSPEEDERLASHIARFGVSCWSSIPELAGLQRCGKSCRLRWMNYL 63
                     678*******************************************97 PP
2Myb_DNA-binding46.68.1e-1569120145
                      TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwq 45 
                      rgr++++E++l++ ++k lG++        +W+ Ia++++ gR+++++k++w+
       Do021902.1  69 RGRFSQQEEDLIIALHKALGNRcsfdhcvhSWSQIAARLP-GRSDNEIKNFWN 120
                      89**************************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-23866IPR009057Homeodomain-like
PROSITE profilePS5129422.1581167IPR017930Myb domain
SuperFamilySSF466891.52E-2414119IPR009057Homeodomain-like
SMARTSM007172.1E-111565IPR001005SANT/Myb domain
PfamPF002491.1E-141663IPR001005SANT/Myb domain
CDDcd001671.13E-101963No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2367127IPR009057Homeodomain-like
PROSITE profilePS5129413.99468127IPR017930Myb domain
SMARTSM007175.6E-1168125IPR001005SANT/Myb domain
PfamPF002494.9E-1369120IPR001005SANT/Myb domain
CDDcd001671.55E-971120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRVHPCCSE EKKVRKGLWS PEEDERLASH IARFGVSCWS SIPELAGLQR CGKSCRLRWM  60
NYLRPDLKRG RFSQQEEDLI IALHKALGNR CSFDHCVHSW SQIAARLPGR SDNEIKNFWN  120
ARLRKKLRQR EASSTGGTNK DPATSHRRRG GEDDRTTQPT AVFSRPFQLQ ARKDQPRPAG  180
YVAGRAAGTS YDNDSHAAGS SVFVDAAAVT SGDAVLAAAE SVAPSPTSTA SACTEARGCD  240
DGFLKAMVDD ASFLFGDFYL DGNNDGSNSF WERHVFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251412725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127RLRKKLR
2122128LRKKLRQ
3123129RKKLRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021902.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741391e-42AF474139.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds.
GenBankAP0029121e-42AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10.
GenBankAP0033391e-42AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06.
GenBankAP0149571e-42AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY4593431e-42AY459343.1 Oryza sativa (japonica cultivar-group) clone CL018501.1 R2R3-MYB gene region.
GenBankCP0126091e-42CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817318.11e-134myb-related protein Hv33-like
SwissprotQ8VZQ23e-59MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A1E5VYS40.0A0A1E5VYS4_9POAL; Transcription factor MYB86
STRINGPavir.Eb00460.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-61myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]