PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do021311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 853aa MW: 91481 Da PI: 5.3789 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 134 | 189 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Do021311.1 134 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 189 688999***********************************************998 PP | |||||||
2 | START | 130.3 | 2.2e-41 | 356 | 592 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddkeqWdetla....k 78 la +aa+ l k+ a+ep+Wv+ + g ev+ e ++ ++e +r+s+vv+m++ +lv +ld + +W e ++ k Do021311.1 356 LAATAADTLAKMCRAGEPLWVRCR--GAGSEVMVADEHARMfswpvdngkqdggsaataARTEGSRDSAVVIMNSITLVDAFLDAN-KWMELFPsivsK 451 57889999****************..6666666666666656777788889999****99**************************.************ PP EEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 79 aetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtw 166 a t++vi+ g g l lm+ e q++splvp R++vf Ry+ + +g+w +vd + q +ssvv+++++pSg++i++++ng+s+v+w Do021311.1 452 ARTIQVINHGassghlgsGSLLLMQGEVQFPSPLVPaREVVFFRYCVHnSDEGTWSVVDFPAEGFQLEALqTSSVVKCQRRPSGCIIQDMPNGYSRVVW 550 ************************************************9999*******888888877779**************************** PP EE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 veh+++ g h++++ v +g+a+ga +wv+ lqrqce+ Do021311.1 551 VEHMEMVGDEKplHQVFKDYVANGAAFGATRWVSLLQRQCER 592 *****98765449***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.71E-19 | 123 | 192 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-21 | 123 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 131 | 191 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 132 | 195 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.61E-19 | 134 | 192 | No hit | No description |
Pfam | PF00046 | 3.6E-18 | 134 | 189 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 166 | 189 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.03 | 346 | 595 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.07E-28 | 349 | 594 | No hit | No description |
SMART | SM00234 | 7.1E-22 | 355 | 592 | IPR002913 | START domain |
Pfam | PF01852 | 6.5E-34 | 356 | 592 | IPR002913 | START domain |
CDD | cd08875 | 1.32E-98 | 366 | 591 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.4E-4 | 482 | 558 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.02E-15 | 611 | 832 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MFGDCQVLSS MAAMAGASSS ADALFIPNPG ALAGFMSSSA AAMPFHHFSS TAASIIPKEE 60 GGIMGALQVA KDEDMDLEMD MELSGGSGSG HLDGLLSFAD VDDDRPEQKP QHSGLELQPV 120 DAGQQQLATN NGKKKRYHRH TAHQIQQMEA LFKECPHPDD KQRLKLSQEL GLKPRQVKFW 180 FQNRRTQMKA QQDRADNVLL RAENESLKSE NYRLQAAIRN VVCPNCGHAA VLGEMSYEEQ 240 QLRIENARLK DELDRLACIA TRYGGGRQPS MSSALGCLSA PSPVLMAPLD LDMSVYSRHF 300 TDQSSIMGCG DLIQSVLAPP QQIITGGAEH HATSSYMGSM APAPVPEQDR QLVLDLAATA 360 ADTLAKMCRA GEPLWVRCRG AGSEVMVADE HARMFSWPVD NGKQDGGSAA TAARTEGSRD 420 SAVVIMNSIT LVDAFLDANK WMELFPSIVS KARTIQVINH GASSGHLGSG SLLLMQGEVQ 480 FPSPLVPARE VVFFRYCVHN SDEGTWSVVD FPAEGFQLEA LQTSSVVKCQ RRPSGCIIQD 540 MPNGYSRVVW VEHMEMVGDE KPLHQVFKDY VANGAAFGAT RWVSLLQRQC ERIASELARN 600 IADLGGILHY RASGSQSWTA LLESTEDTIR VTTRKNTDPG QPSGVILTAV STSWLPFSHQ 660 QVFELLADEQ QRCQLEILSN GGSLHEVAHI ANGSHPRNCI SLLRVNAASN SSQNVELLLQ 720 ESSTHPDGGS LVVFATVDVD AIQVTMSGED PSYIPLLPLG FAIFPATNPS SAATSASSGN 780 SESSPGNPNE PASGCLLTVG MQVLASAVPS AKLNLSSVTA INSHVCNAIH QITTALKGDG 840 ASRAEPAAVG GSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do021311.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ250986 | 0.0 | AJ250986.2 Zea mays mRNA for OCL4 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798256.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Refseq | XP_025798257.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A1E5W1G5 | 0.0 | A0A1E5W1G5_9POAL; Homeobox-leucine zipper protein ROC3 | ||||
STRING | Si034202m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7846 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |