PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021284.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 690aa    MW: 74692.9 Da    PI: 6.4417
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021284.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.6e-32281337259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g+H h+
  Do021284.1 281 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPNCPVKKKVERSQ-EGHITEIVYKGSHSHP 337
                 7****************************************.***************7 PP
2WRKY104.55.8e-33493551159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Do021284.1 493 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGKHNHE 551
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-28278339IPR003657WRKY domain
SuperFamilySSF1182901.7E-25279339IPR003657WRKY domain
SMARTSM007744.2E-36280338IPR003657WRKY domain
PfamPF031065.6E-25281337IPR003657WRKY domain
PROSITE profilePS5081122.228281339IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-37478553IPR003657WRKY domain
SuperFamilySSF1182901.03E-28485553IPR003657WRKY domain
PROSITE profilePS5081137.459488553IPR003657WRKY domain
SMARTSM007742.1E-37493552IPR003657WRKY domain
PfamPF031062.0E-25494551IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAGTDNRRAL MEDWMLPSPS PRTLMSSFLN EEFSSGPFSS IFGDNGSNKP LDGTEKSKIS  60
VDSRVEETIH DTKAPLQLES NFFSTNQKPT SPGGLAERMA ARAGFGVLKI DTSRVSSSAP  120
IRSPVTIPPG VSPRELLESP VFLPNAIAQP SPTTGKLPFL MPNNFKSMIS SVPKKAEDHS  180
HDDCLFSFHP ILRSRPPSFS TVDKCLNAVH QNQSLANDTQ ELSLQAGTTE TKDETEENLA  240
KPSTCDSMLD NDHPSPADEE DDSEGNQNGE DSSGPVTAHS EDGYNWRKYG QKQVKNSEHP  300
RSYYKCTHPN CPVKKKVERS QEGHITEIVY KGSHSHPLPP PNRRPSVALS HANDLQADGS  360
ENFGSRPCHN TEISQGMDPN DQFQDVHSGV LERKLSGSLT TTEIVDTCVM ESPEAVDVSS  420
TLSSNEKDDR ATHGTIPSTY HGGEDETESK RRKMEVSAAT NTTTNGIDMA SMASRAVREP  480
RIVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT YAGCSVRKHV ERASNDLKSV  540
ITTYEGKHNH EVPAARNSSG HPNSGSGAAP QASSLHRRPE PAQPSIPQLS PASAYSSLCF  600
PPQLSAASGS FSFGMLPPGM AVPVPSLGTF VPAPIPGHPP TMQGCSGLVL PGGEVKVNPE  660
GHSRLQVANG NAMAAYQQQF MGRLPQGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36281554878Probable WRKY transcription factor 4
2lex_A5e-36281554878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021284.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820553.10.0probable WRKY transcription factor 2
RefseqXP_025820554.10.0probable WRKY transcription factor 2
RefseqXP_025820555.10.0probable WRKY transcription factor 2
RefseqXP_025820556.10.0probable WRKY transcription factor 2
TrEMBLA0A1E5UZZ20.0A0A1E5UZZ2_9POAL; Putative WRKY transcription factor 2
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-130WRKY DNA-binding protein 2