PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021215.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 777aa    MW: 88138.2 Da    PI: 8.9465
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021215.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.9e-15126208690
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 ++  + +sg+l ++k++a +h  +k++  t++l +++g + W+++l  + +s++ +  ++GW +F ++n+L+egD+++F+ ++++++
  Do021215.1 126 MHRKSVASGILAISKNYAIKHLANKNG--TVQLSQLDGsKIWDINL--DINSDGqCAVSTGWMDFIRDNKLREGDICIFQPSKSKNG 208
                 5666778899***********777555..8*****999899*****..666666599999********************8776554 PP
2B346.75.5e-152983652491
                 HTT---..--SEEEEEE...TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
          B3  24 eehggkkeesktltled...esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                 +++   ++e++t++l+    ++  +We  +  + k +r++l++GW++Fv +n+Lk+gD+++F+l+++ ++ +
  Do021215.1 298 TKYL--PRENQTMRLRRlgpSKDDTWEALF--WVKNRRHYLSRGWRQFVGDNKLKTGDICLFELMKNmKKLT 365
                 4442..334556666662224459******..*********************************9855543 PP
3B356.26.4e-18450536198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ffk +     +++g l++p kfa++++    +   + l+ +sg++W++ +  +k+ ++ +l +GW++Fvka+gL e+D +vF+ +g+s+f   v +f+
  Do021215.1 450 FFKLM--TGDFTKG-LSIPEKFAKNFDWT--R--SIDLKAPSGETWNIGV--DKHVDELFLVSGWEDFVKAHGLMENDLLVFTCSGNSSF--DVVIFE 536
                 55655..4455555.********777643..4..59**************..*******************************9999999..777766 PP
4B341.52.4e-13669766198
                 EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
          B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                 f++vl +s+v ++ + l++p +f+++h  +  +  ++tl    +  +W vk+ y+++ +++      + Fv +n+L+ gD++vF+l++  ++ +++v+v
  Do021215.1 669 FVTVLQTSHVRRRgNFLIFPTRFVADHLDS--RLHEITLVRpNRKDKWCVKYHYTRGAQGVK-NYTFSMFVLENRLRKGDICVFELMKGaRRVTMTVHV 764
                 889999****999556799********444..33478888835669*******999999843.44788*****************99777999999999 PP

                 E- CS
          B3  97 fr 98 
                 +r
  Do021215.1 765 IR 766
                 87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-15114209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16116213IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-11120200No hitNo description
PROSITE profilePS5086311.575121219IPR003340B3 DNA binding domain
SMARTSM010192.2E-6123217IPR003340B3 DNA binding domain
PfamPF023622.2E-11126208IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-18267363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19268362IPR015300DNA-binding pseudobarrel domain
CDDcd100178.43E-14273366No hitNo description
PROSITE profilePS5086312.717275372IPR003340B3 DNA binding domain
SMARTSM010190.0019282372IPR003340B3 DNA binding domain
PfamPF023627.0E-13295366IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19446540IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.648447538IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-19448542IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-18449535No hitNo description
PfamPF023626.7E-15450536IPR003340B3 DNA binding domain
SMARTSM010191.2E-11450538IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-17661768IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-15662767IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-14667766No hitNo description
PfamPF023622.2E-12669766IPR003340B3 DNA binding domain
SMARTSM010191.0E-9669768IPR003340B3 DNA binding domain
PROSITE profilePS508639.545670768IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MFDPSGCEKE LSCVLMDGAP CVQERKGHQG NHTLSPTGKR MEIGSPSGSR KTSKTNPTDS  60
PSQKKAEHVP SSEGIQEPMN SGGFQKPTKS CIVLPTGCIM TSEQRSKVIA LEQKIRPKIP  120
FYITAMHRKS VASGILAISK NYAIKHLANK NGTVQLSQLD GSKIWDINLD INSDGQCAVS  180
TGWMDFIRDN KLREGDICIF QPSKSKNGVA LIFHPLEESH HLQPPGHVPS AKNKSPRHGV  240
PKPRYMLPQH TTLNDQQKSE IDKKVEAIQS KIPIYVAVMH NTNITPPRIL EFGLNYATKY  300
LPRENQTMRL RRLGPSKDDT WEALFWVKNR RHYLSRGWRQ FVGDNKLKTG DICLFELMKN  360
MKKLTMNTLS SSISRKGEGD QAHLGSSDSL RERMQQDQGQ DQDLSLSLSL HTIRSCEIFV  420
LQMVEKGCES CRKWQEHYYW EHMDARKIRF FKLMTGDFTK GLSIPEKFAK NFDWTRSIDL  480
KAPSGETWNI GVDKHVDELF LVSGWEDFVK AHGLMENDLL VFTCSGNSSF DVVIFEASGC  540
EKVSSVFGNR AGPNMRKHFD DMADQGQHAG EHDSLSDSED TTTPSRLIGS LHYASTSKKS  600
GCRNPRQLLP ESPNSSDDHV KSDAIREEDS DEECANSKYY YTRTADRLSD EEKEDIISLA  660
SIRSNNPAFV TVLQTSHVRR RGNFLIFPTR FVADHLDSRL HEITLVRPNR KDKWCVKYHY  720
TRGAQGVKNY TFSMFVLENR LRKGDICVFE LMKGARRVTM TVHVIRMKVD GRFVLLD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6REQ90.0A0A3L6REQ9_PANMI; B3 domain-containing protein
STRINGOMERI12G12100.10.0(Oryza meridionalis)
STRINGOPUNC12G15790.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-29B3 family protein