PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021114.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 577aa    MW: 63345.5 Da    PI: 4.3796
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021114.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.64.1e-09935127
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkk 27
                lp GfrFhPtdeel+ +yLk k++g+ 
  Do021114.1  9 LPLGFRFHPTDEELIRHYLKGKITGQI 35
                699*******************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-9434IPR003441NAC domain
PfamPF023651.1E-61047IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MXVMELKALP LGFRFHPTDE ELIRHYLKGK ITGQINAEVE GGYVLYRLFR KQEERPERPS  60
PEEVDRSGYS PTPSRSSPDN IEANEEANTP LNKESPESAL HQSPIELPNS VETHAVPMTR  120
WLADRNDNLV AAAADVSHIP FNGHANVPQV LNHLCNYKQV DPSAGASAQF INQQNGNGDL  180
NNFVPDIVPN LPHGAFFPGF QQGAFGFDGN MNPPDALDAF LNQTLVDPDE HSSTTSKVQY  240
DSDIPTEFEN HGAVQGEDWW ANLEFLPDEP NPQLSSLYEN TPLLPYDTND QDVLSVDSGA  300
DSLHELFNNM DDSSAKRAGW NNEFALQGTG ISLMPRQSQS CVQPNYLFSN QGTAARRLRL  360
HWPAGVESGE SITRAESEDE VSCVVTPNYL NEAVESTADK DVVSDGDEAE STGIVIRSRP  420
APSSSSESSL TQQGTAMRRL RLQSHLKIGT CPSTDDTSSC IINETESHHK AEKTEIGENA  480
STNFAGSVDD LSGNCDDEQQ KNMPEHVAET AVPEAKSVPR LRKASEKSGK DTIKQEDGLE  540
PHVRAPVQKG GFQSYIIWPV LLVALLLLLC VGVYGWI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820792.10.0protein NTM1-like 9
TrEMBLA0A3L6RM530.0A0A3L6RM53_PANMI; Protein NTM1-like 9
STRINGPavir.Fb00405.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-08TCV-interacting protein