PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021057.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 344aa    MW: 36212.2 Da    PI: 7.023
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021057.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.45.9e-28129189259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDg++WrKYGqK++ g+++pr+YYrCt++   +C ++k+v+r+++dp++++++Y+geH+++
  Do021057.1 129 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqNCLATKQVQRTDDDPTLFDVVYHGEHTCR 189
                 8***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28118189IPR003657WRKY domain
PROSITE profilePS5081121.712123186IPR003657WRKY domain
SuperFamilySSF1182901.44E-25127189IPR003657WRKY domain
SMARTSM007742.7E-40128190IPR003657WRKY domain
PfamPF031061.1E-26129189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAEGGENGGR ARLVSELGRV QDLVRQLELL LHAPSDAASV ELGRRLIHQI VALTDRSIGM  60
ARATDLAAHF LPAAAQQQQT LSGAPSPLSD AGSDQAFRAS PKKRKATARW TSQQARVSAA  120
GGGAEGPADD GHSWRKYGQK DILGAKHPRA YYRCTHRNSQ NCLATKQVQR TDDDPTLFDV  180
VYHGEHTCRP SGSGSGGGAR RAPQHNPHAH PQQHNPHAQS ALQGLAARLT VATAATDAVI  240
GGAAALPPMT PESCPARGAS SPWSLASPVG SDSYGCPQGV SPCPVPGYRD WGSDGDLQEV  300
VSAAAFAAVS HLPALDNEYM PLECFAFDQS FDMDGGAMPS LFYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-23129189969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021057.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586270.0KU058627.1 UNVERIFIED: Panicum miliaceum WRKY14-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820899.11e-152probable WRKY transcription factor 41
TrEMBLA0A1E5V0M80.0A0A1E5V0M8_9POAL; Putative WRKY transcription factor 41
STRINGSi015433m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-32WRKY family protein