PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020978.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 290aa    MW: 31360.7 Da    PI: 10.1695
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020978.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.44.1e-08242280140
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy 40 
                 lp Gf F+Ptdeel+ +yL++k+ + +l++  +i+++d+ 
  Do020978.1 242 LPIGFCFRPTDEELLLHYLRHKALACPLPA-GIIPDADLA 280
                 699************************999.889999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.097119153IPR002885Pentatricopeptide repeat
PfamPF130411.3E-8189232IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.95190224IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-6192224IPR002885Pentatricopeptide repeat
SuperFamilySSF1019413.14E-12233282IPR003441NAC domain
PROSITE profilePS5100513.169242290IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
AFESAATAPK SRHTTPSLIP RPLESATRLH PLSARQLPPS AVRPSSPSAS TSASRLSPLA  60
RFLLNALQHH QRWGPPVVAD LTKLRRVLPS LVAEVLTAPP PLVLPFFLWA GHQKGFRHCF  120
PAFHALTSLL SAAGLPAAAD QLPDLMRAHG KPISHPQLTL LVRLHTAARR PLRAFHAPRH  180
FRHEFDIKPE VHTCNRVLGA LAAAGHVEDA LKLFDEMSEA EMQPMPVTFA IMGPAGAPVA  240
GLPIGFCFRP TDEELLLHYL RHKALACPLP AGIIPDADLA CLPSLKTPCA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803931.12e-96pentatricopeptide repeat-containing protein At4g20740
RefseqXP_025803932.12e-96pentatricopeptide repeat-containing protein At4g20740
TrEMBLA0A2S3GW896e-95A0A2S3GW89_9POAL; Uncharacterized protein
STRINGSb02g004410.11e-92(Sorghum bicolor)
STRINGGRMZM2G406746_P019e-93(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-09NAC domain containing protein 47