PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020754.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 482aa    MW: 51289.4 Da    PI: 7.9109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020754.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.6e-33203261260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+++++i+Y+g Hnh+k
  Do020754.1 203 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGRITQIVYKGAHNHPK 261
                 8********************************************************85 PP
2WRKY105.82.3e-33361419159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d+++v++tYeg+Hnh+
  Do020754.1 361 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDTRAVITTYEGKHNHD 419
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.613197262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-28199262IPR003657WRKY domain
SuperFamilySSF1182909.55E-26200262IPR003657WRKY domain
SMARTSM007741.0E-35202261IPR003657WRKY domain
PfamPF031061.2E-24203260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-36346421IPR003657WRKY domain
SuperFamilySSF1182903.27E-29353421IPR003657WRKY domain
PROSITE profilePS5081138.124356421IPR003657WRKY domain
SMARTSM007743.6E-39361420IPR003657WRKY domain
PfamPF031061.4E-25362419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MASSTGSLEH GGFTFTPPPF ITSFTELLSG TGDMLGADQE RSPRGLFHRG ARAGVPKFKS  60
AQPPSLPISP PPMSPSSYFA IPAGLSPAEL LDSPVLLHSS SSILASPTTG AIPAQRYDWK  120
QAAELIASQS QQEESRAAGG FNDFSFHTAG SNAMPTQTTS FPSFKEQQQV ETVNKSVVAA  180
TNNNKASSGN NSNGGSNSNT KLEDGYNWRK YGQKQVKGSE NPRSYYKCTY HSCSMKKKVE  240
RSLADGRITQ IVYKGAHNHP KPLSTRRNSS GGAAAEDQAA NSLSAAAGCG PEHSGATPEN  300
SSVTFGDDEA ENGSQRSDGD EPDAKRWKED GENEGSSAGA GGKPVREPRL VVQTLSDIDI  360
LDDGFRWRKY GQKVVKGNPN PRSYYKCTTV GCPVRKHVER ASHDTRAVIT TYEGKHNHDV  420
PVGRGAASRA PPPVAQPQVV ASGHHQPYTL EMLSNGGGGA YGGGYAAKDE PRDDLFVDSL  480
LC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-35187421277Probable WRKY transcription factor 4
2lex_A3e-35187421277Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020754.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586030.0KU058603.1 UNVERIFIED: Panicum miliaceum WRKY16-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807559.10.0WRKY transcription factor WRKY24-like
SwissprotQ6IEQ71e-122WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A1E5V1I90.0A0A1E5V1I9_9POAL; Putative WRKY transcription factor 26
STRINGPavir.Ca01475.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.14e-95WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]