PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do020646.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 372aa MW: 40214.5 Da PI: 6.9573

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do020646.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.9	1.2e-50	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+v+yL +++++ ++++ +i++vdiyk++PwdLp+k+ ++ e+yfFs+rd+ky++g r+nra+ sgyWkatg+dk+++++ +ge Do020646.1 16 LPPGFRFHPTDEELIVHYLMNQAASIPCPV-PIIADVDIYKFDPWDLPSKALYGDGEYYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHDSaTGE 113 79**************************.88***********77777899*********************************987888 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfykgr p+g+kt+W+mheyrl Do020646.1 114 GVGVKKALVFYKGRPPRGTKTNWIMHEYRL 143 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.16E-63	6	179	IPR003441	NAC domain
PROSITE profile	PS51005	59.189	16	179	IPR003441	NAC domain
Pfam	PF02365	4.2E-26	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MEIEMMSAAQ SATSQLPPGF RFHPTDEELI VHYLMNQAAS IPCPVPIIAD VDIYKFDPWD 60 LPSKALYGDG EYYFFSPRDR KYPNGIRPNR AAGSGYWKAT GTDKPIHDSA TGEGVGVKKA 120 LVFYKGRPPR GTKTNWIMHE YRLAAANPLA TAAAYRPPSK FRNVSMRLDD WVLCRIYKKS 180 GQASPMVPPL ADYEHLDHDE PSTGGFDDIC SFYAPTSSSG ASTTASSAIM QQQPATALLP 240 GLPKIPSISE LFDEYALAQI FDTAVPAEQD PLAVHPSLNQ LLAVGDNAHY SDMTIYSPSP 300 AAGGKRKAMA MSRDVCAGGA GMITAAGHHH HHPPPAKRLN GSCFDAPHQP ATGLPATSSV 360 LGGLNHHMLP QF

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MEIEMMSAAQ SATSQLPPGF RFHPTDEELI VHYLMNQAAS IPCPVPIIAD VDIYKFDPWD  60
LPSKALYGDG EYYFFSPRDR KYPNGIRPNR AAGSGYWKAT GTDKPIHDSA TGEGVGVKKA  120
LVFYKGRPPR GTKTNWIMHE YRLAAANPLA TAAAYRPPSK FRNVSMRLDD WVLCRIYKKS  180
GQASPMVPPL ADYEHLDHDE PSTGGFDDIC SFYAPTSSSG ASTTASSAIM QQQPATALLP  240
GLPKIPSISE LFDEYALAQI FDTAVPAEQD PLAVHPSLNQ LLAVGDNAHY SDMTIYSPSP  300
AAGGKRKAMA MSRDVCAGGA GMITAAGHHH HHPPPAKRLN GSCFDAPHQP ATGLPATSSV  360
LGGLNHHMLP QF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-72	16	184	20	173	NAC domain-containing protein 19
3swm_B	2e-72	16	184	20	173	NAC domain-containing protein 19
3swm_C	2e-72	16	184	20	173	NAC domain-containing protein 19
3swm_D	2e-72	16	184	20	173	NAC domain-containing protein 19
3swp_A	2e-72	16	184	20	173	NAC domain-containing protein 19
3swp_B	2e-72	16	184	20	173	NAC domain-containing protein 19
3swp_C	2e-72	16	184	20	173	NAC domain-containing protein 19
3swp_D	2e-72	16	184	20	173	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do020646.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067914	0.0	BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds.
GenBank	EU971399	0.0	EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds.
GenBank	KP297932	0.0	KP297932.1 Zea mays Zma1158 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800259.1	0.0	NAC domain-containing protein 48-like
Swissprot	Q8H4S4	3e-83	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A1E5V1K6	0.0	A0A1E5V1K6_9POAL; NAC transcription factor 29
STRING	Si030267m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	5e-79	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]