PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020446.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 765aa    MW: 78317.9 Da    PI: 6.7047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020446.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.4e-065073123
                EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                y C++C++sF r   L+ H+r+ H
  Do020446.1 50 YMCTICSRSFGREKKLQAHMRLaH 73
                89*******************988 PP
2zf-C2H211.20.0011439458120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ykC+dC+++F ++  L  H 
  Do020446.1 439 YKCTDCDETFYSPQALGGHA 458
                 9***********99997775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-54975No hitNo description
Gene3DG3DSA:3.30.160.601.2E-44970IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.1E-45075IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3235078IPR007087Zinc finger, C2H2
SMARTSM003559.5E-45073IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805273IPR007087Zinc finger, C2H2
SuperFamilySSF576676.57E-5435470No hitNo description
PfamPF139122.8E-4439462IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411439466IPR007087Zinc finger, C2H2
SMARTSM003550.47439461IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280441463IPR007087Zinc finger, C2H2
PfamPF139121.2E-5483509IPR007087Zinc finger, C2H2
SMARTSM003554.4484507IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280486507IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MTSNKPPPPP PSPPPPPLLP SPPPRRSREA YGLLRDAAQS GLGFVAAEPY MCTICSRSFG  60
REKKLQAHMR LAHRDGSTSP PSFEEAFTPP KRASKKLKPK SATVKMEPRD DEPPLPLSMI  120
WGATSLRGQS PIHAAGEELA GPDRSLVANA LHNVTGTTQV GVNGVNQPGV AEISRGEEDL  180
VSFSTHQLGH VLGLHIDGGH VDQAVAPPAE NPEVTVSGLI VIEDDSSDDD NANPTIAVTG  240
FGVVASSAPD AAAFLPMARA PAAATTVIDI PDDSSDDDNA IPINAVTGIG AVANSGPDAA  300
AVLPMPRAPA AAAAAAVAPA PGPHVTASLT FALPAPAAAA TAAVTIPWAP APAAAVTIAT  360
APPAATMGVA TPMAPDTVRG NGFHEAGARY SNGGYGKAGA GYRNVGYGKA ADGYSSGGYG  420
YGRTIAVGGQ RKRGLGYPYK CTDCDETFYS PQALGGHAAG HRHKEKSKAM LDLQIASVPR  480
SGRHVCTLCD MVFPKGQAVG WHNRKVHCAS LISAASGASS SSAPHPAAAV QPSEAIAMNH  540
NAAPIHGPAN ATRHGSFPAS ARSTILALPA LGPLHKPPRA TGMAGNPVAG LVAGAHVATG  600
SSSLPATTSV LPAIPLQNQE DNPPAVVPGN HGGRTIRIGF VTFPAFPSQN QENPPEEVAV  660
APGNGEHRSI RLSGFNTSPP FPWQSQEENP PEIVPGNRRP EEVAVVPGSG EPGSIRLFGV  720
DISPPFALQS QEENPPEELV PGNHGPPTVH LFGANTVEGP EEPKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5V5X60.0A0A1E5V5X6_9POAL; Uncharacterized protein
STRINGPavir.Ha01132.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1867479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-10salt tolerance zinc finger