PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GeBP | ||||||||
Protein Properties | Length: 373aa MW: 39847.7 Da PI: 5.3002 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 103.3 | 1.9e-32 | 67 | 166 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q ife+++ iW Do020402.1 67 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAIFEIARTIW 165 79*************************8867778***************************************88899********************* PP DUF573 97 g 97 + Do020402.1 166 R 166 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.5E-30 | 68 | 165 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MFPTVDDPSA AGAMVSSSFP DADAYGNGDS DDLDFPVDPN PNPVFSSPAA APASVSAAPA 60 AGERRPLFQR LWTDEDEIVI LRAFAEFTAQ RGTSFASHQY DTTPFYEDMR RRLHTGFTKN 120 QLVEKIRRLK RKYRNCVERL RVAGAGFTFR SPHEQAIFEI ARTIWRPDSD KHSRDSDDEG 180 GAAGNAHDAP FAIDAVAANG GESTKSPTSR PRRGRRRRTG DFPADAAPET LALPPAPMPL 240 MTEDALPAAF PQTAAMDGGV GVGGFSMDPA AGLPAALSAA AAATAVTGGA TAENPVLAAL 300 FKEMVRAMLS IGGGVSAAPL GLEPPPAIAG VPMEGEKWRQ QRIRELEVYL RRIDLLQDQA 360 RAALEELRSA PHT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020402.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064599 | 0.0 | BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds. | |||
GenBank | EU972116 | 0.0 | EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794014.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A1E5VM57 | 0.0 | A0A1E5VM57_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G026417_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 3e-32 | DNA-binding storekeeper protein-related transcriptional regulator |