PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020378.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 318aa    MW: 33840.1 Da    PI: 10.1118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020378.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-31246304259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  dp+++++tYegeH+h+
  Do020378.1 246 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGDPSMLIVTYEGEHRHS 304
                 69************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-20194243IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.1E-32234304IPR003657WRKY domain
PROSITE profilePS5081130.366240306IPR003657WRKY domain
SuperFamilySSF1182903.27E-26243304IPR003657WRKY domain
SMARTSM007743.9E-37245305IPR003657WRKY domain
PfamPF031063.0E-26247303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMTLDLMGVY GRVDEQVATQ EAAAAGLRGM EHLISQLSRA GTGERSSSPP AAAVQHQQPE  60
QQVDCREITD MTVCNFKKVI SFLNRTGHAR FRRGPVVAQS AGPAASELAT LPARSAPAPR  120
PVTLDFTKSV SGYTRDSGFS MSGASSSFLS SVTSGEGTVS NGRGGGSSSL MLPPAPGAAS  180
CGKPPLSSSG AGQKRRCHEH AHSENVAGGK YGATGGRCHC SKRRKHRVKR TIRVPAISPK  240
VADIPADEYS WRKYGQKPIK GSPYPRGYYK CSTVRGCPAR KHVERDPGDP SMLIVTYEGE  300
HRHSPAGQDP PLPELPNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20233304272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020378.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669050.0EU966905.1 Zea mays clone 298088 WRKY51 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975218.11e-180WRKY transcription factor WRKY51
SwissprotQ6IEN11e-150WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A1E5UWF80.0A0A1E5UWF8_9POAL; Putative WRKY transcription factor 11
STRINGSi012025m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-94WRKY DNA-binding protein 11