PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 18255.2 Da PI: 12.2023 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38 | 4.2e-12 | 69 | 105 | 16 | 55 |
AP2 16 vAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 vAeIrd p r +r++lg+f taeeAa+a++ a ++++g Do020244.1 69 VAEIRDpP-----RgRRVWLGTFNTAEEAAAAYDTACLRIRG 105 8*****99.....56***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.7 | 52 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-14 | 65 | 113 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-18 | 65 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-20 | 65 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.02E-19 | 66 | 113 | No hit | No description |
Pfam | PF00847 | 5.5E-6 | 69 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
LASPPWSHWT DGHNTVHHPI PIQRGRGRRG GGGGGKHEVQ PRAPPDRRGR EGGRGSSDGG 60 GDAGQGRAVA EIRDPPRGRR VWLGTFNTAE EAAAAYDTAC LRIRGPSAST NLPPPPSACC 120 LATSSSPNPR QRARRWRWNA RGEAAVAGRA GLGRGGGGAW PRGAERRWGG MGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020244.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5V2W0 | 1e-115 | A0A1E5V2W0_9POAL; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 1e-13 | cytokinin response factor 1 |