PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020096.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 564aa    MW: 59761.5 Da    PI: 5.8342
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020096.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.8e-32220277260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK++kgse+prsYY+C+++gCp+kkkvers  d++v+ei+Y+g Hnh+k
  Do020096.1 220 DDGYNWRKYGQKNMKGSENPRSYYKCSFPGCPTKKKVERSP-DGQVTEIVYKGAHNHPK 277
                 8****************************************.***************85 PP
2WRKY102.13.2e-32394452159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+ +d+++v++tYeg+Hnh+
  Do020096.1 394 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERACHDTRAVVTTYEGKHNHD 452
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-29209278IPR003657WRKY domain
PROSITE profilePS5081124.26214278IPR003657WRKY domain
SuperFamilySSF1182904.32E-25215278IPR003657WRKY domain
SMARTSM007745.8E-36219277IPR003657WRKY domain
PfamPF031062.6E-25220276IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-36379454IPR003657WRKY domain
SuperFamilySSF1182905.62E-29386454IPR003657WRKY domain
PROSITE profilePS5081137.883389454IPR003657WRKY domain
SMARTSM007745.4E-37394453IPR003657WRKY domain
PfamPF031062.3E-24395452IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MTSTPGSFGT LANSGPVALS FATSSFASFL GGGPASSSGA DSGGIAGLSK YKAMPPPSLP  60
PPSPSSYLNA FSGLLDSPIL LTPSLFPSPT TGAIPSEPFN WMGTAENLQA SVKDEQRQYT  120
DFTFQTAASV PETVAGAAQT ASFPQSSSML MAPLGGLGDS YNGELQQQQQ QPWSYQQEPT  180
TQFEAPSAAT TQPDMLGNGG YSSVPAAASF REQSNRPSSD DGYNWRKYGQ KNMKGSENPR  240
SYYKCSFPGC PTKKKVERSP DGQVTEIVYK GAHNHPKPQS TRRSASSAPA PAASSYVLQS  300
ASDAAAEHSF GALSGTPVAT PENSSGSFGD DEVNGVSSRL ACNFGAEELD DDEPDSKKWK  360
KDGGDGEGIS VAGGNRTVRE PRVVVQTMSD IDVLDDGYRW RKYGQKVVKG NPNPRSYYKC  420
TTVGCPVRKH VERACHDTRA VVTTYEGKHN HDVPPARGTA SLYRAALTAQ QAASYHQQMQ  480
SSGGVVVPTD GRFGFNAGGS HGVPTQAGES GGFALSGFGN PLGTAYSYTS HQQQQQSDAM  540
YYAQSAKDEP RDEDMSFFEQ PLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-35220454877Probable WRKY transcription factor 4
2lex_A5e-35220454877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020096.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961763.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-150WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1E5UYK50.0A0A1E5UYK5_9POAL; Putative WRKY transcription factor 33
STRINGSi021634m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.18e-89WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]