PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019705.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 340aa    MW: 36463.4 Da    PI: 6.8823
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019705.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-32188245259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s +prsYYrCt a+C vkk+vers++dp++v++tYeg+H+h+
  Do019705.1 188 EDGYRWRKYGQKAVKNSSYPRSYYRCTAARCGVKKRVERSQQDPSTVVTTYEGQHTHP 245
                 8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-34172247IPR003657WRKY domain
SuperFamilySSF1182901.31E-28179247IPR003657WRKY domain
PROSITE profilePS5081130.572182247IPR003657WRKY domain
SMARTSM007741.6E-37187246IPR003657WRKY domain
PfamPF031065.6E-26188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSGAGGHGRG LDGDFDPAAD HFTAFDDHGD FFFERSPCAG EGGGGSGGDG LMAPYSSIMD  60
YLQGFLDPAG LAAHLDEPCR LGDDAVKREM EEVRLIRHDG PAAGAPPVTP NSSVLSSSSC  120
EAGGAHERRR GKKGRLEEEE EQEEIDADEG SAADGNCKKS KEKKARGEKK PREPRVAFMT  180
KSEVDHLEDG YRWRKYGQKA VKNSSYPRSY YRCTAARCGV KKRVERSQQD PSTVVTTYEG  240
QHTHPSPVSL LRGAGAGGGA YALAAPQQLG FRHDLRAMID YARGTRTMTP SSLLLPPAGG  300
LPAPTPRPLQ EHMHRRSSSH LAAYGGVLDF IPSAMGDGHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26178247877Probable WRKY transcription factor 4
2lex_A6e-26178247877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586071e-120KU058607.1 UNVERIFIED: Panicum miliaceum WRKY7-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961086.11e-139probable WRKY transcription factor 57
TrEMBLA0A1E5V4120.0A0A1E5V412_9POAL; Putative WRKY transcription factor 23
STRINGSi022568m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-40WRKY DNA-binding protein 23