PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019504.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 380aa    MW: 41798.6 Da    PI: 7.9692
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019504.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.43e-262492270
    trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + ++++
  Do019504.1 24 WVREETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARS 92
                ****************************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.5131680IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.4E-51782IPR009057Homeodomain-like
SMARTSM007179.8E-62082IPR001005SANT/Myb domain
CDDcd122032.45E-272287No hitNo description
PfamPF138372.0E-1823115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
GGHNSSSRAA AAAGSAPKRR AETWVREETL CLIALRREMD AHFNTSKSNK HLWEAISARM  60
RDQGFDRSPT MCTDKWRNLL KEFKKARSHA RSSGGGSGAG GNGNAKMAYY KEIDDLLKRR  120
GKASGSGGCV GSGSGSGAGK SPTSNSKIES YLQFATDNGF EDANIPFGPV EANGRSILSI  180
DDRLEDDRHP LPLTAADAVA TNGVNPWNWR DTSTNGGDNQ GSFGGRVILV KWGDYTKRIG  240
IDGTAEAIKE AIKSAFGLRT RRAFWLEDED EVVRSLDRDM PIGTYTLHLD DGNFGSITIT  300
ILMTMYLVST FFSGVTIKLC DASRMQTPED KTFYTEEDFR DFLVRRGWTL LREYGGYRNI  360
DSLDDLRPGV IYQGLRSLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A8e-3918112186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0555220.0BT055522.1 Zea mays full-length cDNA clone ZM_BFc0047D18 mRNA, complete cds.
GenBankKJ7279510.0KJ727951.1 Zea mays clone pUT6049 trihelix transcription factor (THX25) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146488.10.0uncharacterized LOC100280076
SwissprotQ9FX531e-138TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A1E5UQR20.0A0A1E5UQR2_9POAL; Trihelix transcription factor GT-1 (Fragment)
STRINGGRMZM2G047370_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-126Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]