PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 27460.1 Da PI: 9.6647 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.5 | 2.9e-12 | 123 | 164 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++a+ Do019457.1 123 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 164 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.939 | 98 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-6 | 122 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-8 | 122 | 167 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.8E-5 | 122 | 179 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-7 | 125 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGQQEGMQLL GMVAVDTVEG GISSMVSLRR RRLLGLCSGK DSLPVDLPKP IENEKPVEVA 60 HSNVKPFSVH PLPSTKTSDV LTKSSNGSDD SKEEKTPYYP GKEIKRRKRH RRKQYVDQEP 120 CIMRGVYFKN MKWQAAIKVD KKQIHLGTVG TQEEAARLYD RAAFMCGREP NFELSDGEKK 180 ELQKYTWEDF LAVTRNTITS KKQRKVGLLR RSKADLFMGQ SDGDTEMANG GGSSNSDNGD 240 AETSAS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019457.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064879 | 0.0 | BT064879.1 Zea mays full-length cDNA clone ZM_BFb0311A16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151501.1 | 1e-144 | uncharacterized protein LOC100285135 | ||||
TrEMBL | A0A1E5W7K4 | 0.0 | A0A1E5W7K4_9POAL; Ethylene-responsive transcription factor-like protein | ||||
STRING | Pavir.Aa01947.1.p | 1e-143 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 4e-46 | ERF family protein |