PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 203aa MW: 22266.8 Da PI: 11.7426 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 73.4 | 6.9e-23 | 31 | 86 | 4 | 59 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpai 59 k++++++hTkv g + +R+ a+caar+F+L++eL + +d++tieWLlqqa+pa Do019252.1 31 LKRPTKDRHTKVKGCGGQIRMLALCAARVFQLTQELCHNTDGETIEWLLQQAEPAS 86 589***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 16.665 | 35 | 89 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.7E-19 | 35 | 85 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
LALGRCGWRR AAWASGSFGG VKKKTMVPEG LKRPTKDRHT KVKGCGGQIR MLALCAARVF 60 QLTQELCHNT DGETIEWLLQ QAEPASSPPS ALDHPDQLLL PRRVPPLWRL APLLRLPRHV 120 WMELDRTILL ELGLATMERD RGRWQTGMGA GGRQTGTGGR SEGGRGCGRS VGSEFFPLPT 180 RRGSGRIASV RFMGGAGHRI GVW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019252.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071804 | 7e-77 | AB071804.1 Oryza sativa Japonica Group mRNA for transcription factor PCF3, partial cds. | |||
GenBank | AC120539 | 7e-77 | AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence. | |||
GenBank | AP014967 | 7e-77 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5VIY4 | 1e-142 | A0A1E5VIY4_9POAL; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 4e-24 | TCP family protein |