PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019073.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 959aa    MW: 105517 Da    PI: 6.3009
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019073.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-19178270190
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d +  +W++++i+r++++r++lt+GW+ Fv  ++L +gD+v+F +   s +
  Do019073.1 178 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfNMQPPA-QELQARDIHDTVWTFRHIFRGQPKRHLLTTGWSLFVGGKRLFAGDSVIFVRA--SPT 270
                 99*****************************9555544.49***********************************************943..333 PP
2Auxin_resp87.13.4e-292663321883
  Auxin_resp  18 rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 ras++eFv++++k++kal+ +++s+GmRf+m+fete+   rr++Gt++g+sdldpvrW+nS+Wr+L+
  Do019073.1 266 RASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGISDLDPVRWKNSQWRNLQ 332
                 899***************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-35167272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-33171272IPR015300DNA-binding pseudobarrel domain
CDDcd100174.58E-17177274No hitNo description
PfamPF023623.5E-17178270IPR003340B3 DNA binding domain
PROSITE profilePS5086310.743178280IPR003340B3 DNA binding domain
SMARTSM010193.0E-17178279IPR003340B3 DNA binding domain
PfamPF065073.6E-24266332IPR010525Auxin response factor
PfamPF023091.9E-9824911IPR033389AUX/IAA domain
PROSITE profilePS5174529.021826910IPR000270PB1 domain
SuperFamilySSF542772.84E-7843905No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MKQSPASSGV VPAAAAAAAS PGGAPPEGER KAPAINADLW YACAGPLVSL PPVGSLVVYF  60
PQGHSEQVRA ASSSCPVRAA STCNTMLAVV ICGDASASSM GFCDRIFNWF LDFLPVFSGS  120
HACNHQVQKS SPFHSQADPD TDEVYAQMTL QPVNTYGKEA LQLSELALKH ARPQMDFFCK  180
TLTASDTSTH GGFSVPRRAA EKILPPLDFN MQPPAQELQA RDIHDTVWTF RHIFRGQPKR  240
HLLTTGWSLF VGGKRLFAGD SVIFVRASPT EFVIPFAKYQ KALYSNQISL GMRFRMMFET  300
EELGMRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESAA GERRNRVSMW EIEPIAAPFF  360
ICPQPFFGVK RPRQLDDESS EMENLFKRAM PWLGEEICIK DAQTQNTTMP GLSLVQWMNM  420
NRQQSSTLAN TGIQSEYLRS LSNPAMQNLG ATELARQLYV QNHLLQRNSA QLNASKLPQQ  480
MQPINELSKG VLSQKLLLDM QQLSSSCSLA QQRIMPQQDS KVSLQASPAP PPMKQQQHQK  540
LSQKQVALAD MSDVAFPPIS STNVVSKDGS PLMIPGAAQS VLTEEIPSCS TSPSTANGNH  600
LAHPIPGRNE HCKVNTEKVP QPSALMSIPT SVETVTAAPI MAKDLSKLNH NVKGNVITSK  660
SPTGGTSPDN LLNIVPSTDN LETASSATSL WPTQTDALLH QGFPTSNFNQ QQMFKDALPD  720
VEIQDVDPTN NAFFGISNDG PLGFPMETEG LLVSALNPVK CQTHMSTDVE NNYRIQKDQQ  780
EISTSMVSQS FGQSDIAFNS IDSAINDGAL LNRNPWLPAP PPQKMRTFTK VYKRGAVGRS  840
IDIGRYSGYE ELKHALARMF GIEGQLEDRQ RIGWKLVYKD HEDDILLLGD DPWEEFVNCV  900
KCIRILSPQE VQQMSLDGDL GNNVLSNQAC SSSDGGNAWR PRCDQNPGNP SIGFYDQLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-992835345388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019073.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045350.0HM004535.1 Zea mays auxin response factor 20 (ARF20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951920.10.0auxin response factor 5
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A1E5WHN90.0A0A1E5WHN9_9POAL; Auxin response factor
STRINGOMERI02G04130.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-137auxin response factor 19