PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | AP2 | ||||||||
Protein Properties | Length: 462aa MW: 49838.7 Da PI: 6.2415 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.9 | 9.1e-12 | 128 | 184 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Do019029.1 128 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 184 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.4 | 4.6e-15 | 227 | 278 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Do019029.1 227 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 278 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.31E-17 | 128 | 194 | No hit | No description |
SuperFamily | SSF54171 | 6.08E-15 | 128 | 193 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-9 | 128 | 184 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-12 | 129 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 129 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-22 | 129 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 130 | 141 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-10 | 227 | 278 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-18 | 227 | 288 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.72E-23 | 227 | 288 | No hit | No description |
PROSITE profile | PS51032 | 19.045 | 228 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-18 | 228 | 287 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 228 | 292 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 268 | 288 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSSAPPLG EEGAVESSPK MEDFLGGVGG 60 TGAPPATAAE DQLVCGELGS IAAGFLRQYP TPGTVENPGA VTVATMSTDV AESDQARRPA 120 ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGGYDKEEK AARAYDLAAL 180 KYWGPTTTTN FPVANYEKEL EEMKSMTRQE FIASLRRKSS GFSRGASIYR GVTRHHQHGR 240 WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVESILNSDL 300 PVGGGAAGRA SKFPLDSLPP ATAAAMITGA ASQAMPPSEK DYWSLLALHY QQQQQQEQFP 360 ASTYEAYGSG VNVDFTMGTS SHSGSNTTSG VMWGATTGAM GHQQDSSSNK QGNSYAGNIP 420 YAAAAMVSGS AGYEGSTGNN GTWVTSNTST APQYYNYLFG ME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019029.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040003 | 0.0 | BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965682.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-126 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1E5V5G5 | 0.0 | A0A1E5V5G5_9POAL; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | Si008325m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-120 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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