PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do018651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 25570.8 Da PI: 8.4809 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++ + L H +H Do018651.1 106 YECSVCGKVYASYQALGGHKTSH 128 99********9999998887776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.034 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.33E-8 | 106 | 128 | No hit | No description |
Pfam | PF13912 | 6.3E-13 | 106 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.04 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.33E-8 | 158 | 185 | No hit | No description |
Pfam | PF13912 | 1.9E-11 | 162 | 187 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.12 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.52 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 165 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MSLAMALDAA LDVASKPPVP PPSPPRMDSW ARGGRRSKRR AGSPSSGGGG GGGGGAEQSE 60 EEYLALCLLM LSRGVRGDDA EDGGGVVVAA SKSAGAAAAA KASQGYECSV CGKVYASYQA 120 LGGHKTSHRK PPTPPAPATP QVAAAPAGEE PAPGGAHAEE KVHQCTLCLR TFPTGQALGG 180 HKRLHYEGGA DGVKADKDAA KTKAASAAQA TSVLRDFDLN LPAATAAATA ATTVEEPERA 240 LPEAKRARMM LLVV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do018651.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958179.1 | 6e-83 | zinc finger protein 1-like | ||||
TrEMBL | A0A1E5V008 | 1e-178 | A0A1E5V008_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J16973.1.p | 3e-79 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49930.1 | 5e-23 | C2H2 family protein |