PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do018519.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 459aa MW: 49478.9 Da PI: 9.4256

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do018519.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.8	4.8e-13	148	189	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNk 43 k rr+++NReAAr+sR+RKka+i++Le + + Le+e++ Do018519.1 148 KTLRRLAQNREAARKSRLRKKAYIQQLESgriRLAHLEQEMQ 189 7789***********************954448899999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-8	144	189	No hit	No description
SMART	SM00338	1.7E-5	144	224	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.577	146	176	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.9E-10	148	190	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.25E-7	148	181	No hit	No description
PROSITE pattern	PS00036	0	151	166	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.2E-25	227	299	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MAYPSTSGMV QTSSSLRGSI RRDPEGYDMP SDLDQALLLY FDGQQAKPSI QEQQPQTLNI 60 FPSQPMHHID PSPKGSMASS AAAAAQVVAG PSKNPQAPSS KPGGGPLAVG KSSKTAMIKR 120 EGSAGGGKHG GAGASSSDQE GPRTPDPKTL RRLAQNREAA RKSRLRKKAY IQQLESGRIR 180 LAHLEQEMQM SRTHQGALWG AGTLSPDAAL FNLEYERWLG DNSKVVSRLR AAAEEHRPDG 240 ELRAYADEAA SHYGALMGHK ARLAAADPLH LLSGLWKGAA ERCFLWIGGF RPSELIKLAN 300 TEQVAVRHVE PLVEQQAAGA RDVEQAARRA EEALDAELEA LLRSLSEVVS SDAQQPPPGV 360 FGGQLYQHHP GADAAAGYMG MGHMHMALAM DKLATLGNFL RQADELRMQA LHALRQILTA 420 RQAARCFIAV DDYFCRLRAL STLWTTSRTV PQLARGPAG

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MAYPSTSGMV QTSSSLRGSI RRDPEGYDMP SDLDQALLLY FDGQQAKPSI QEQQPQTLNI  60
FPSQPMHHID PSPKGSMASS AAAAAQVVAG PSKNPQAPSS KPGGGPLAVG KSSKTAMIKR  120
EGSAGGGKHG GAGASSSDQE GPRTPDPKTL RRLAQNREAA RKSRLRKKAY IQQLESGRIR  180
LAHLEQEMQM SRTHQGALWG AGTLSPDAAL FNLEYERWLG DNSKVVSRLR AAAEEHRPDG  240
ELRAYADEAA SHYGALMGHK ARLAAADPLH LLSGLWKGAA ERCFLWIGGF RPSELIKLAN  300
TEQVAVRHVE PLVEQQAAGA RDVEQAARRA EEALDAELEA LLRSLSEVVS SDAQQPPPGV  360
FGGQLYQHHP GADAAAGYMG MGHMHMALAM DKLATLGNFL RQADELRMQA LHALRQILTA  420
RQAARCFIAV DDYFCRLRAL STLWTTSRTV PQLARGPAG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do018519.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055042	0.0	BT055042.1 Zea mays full-length cDNA clone ZM_BFc0123E11 mRNA, complete cds.
GenBank	KJ727604	0.0	KJ727604.1 Zea mays clone pUT5464 bZIP transcription factor (bZIP70) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965885.1	0.0	transcription factor TGAL8 isoform X1
Swissprot	Q69T21	1e-177	TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBL	A0A1E5W0M4	0.0	A0A1E5W0M4_9POAL; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRING	Si006417m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12972	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	3e-65	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]