PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018433.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 394aa    MW: 41532.1 Da    PI: 4.8691
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018433.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35431342102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i+
    Do018433.1  43 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLCDIH 130
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Do018433.1 131 RRKV 134
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-3834127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5939132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.59E-3540132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-204366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-3243132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-2094106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAEQGGDAGE AGGSEPPKPA PAPAPAPAPT AEAAGQRSLP TPFLTKTYQL VDDPAVDDVI  60
SWNEDGSTFV VWRPAEFARD LLPKYFKHNN FSSFVRQLNT YGFRKIVPDR WEFANDCFRR  120
GEKRLLCDIH RRKVAPAAAL ATAAAAAASG AVTVATAPIP MALPVTLPGS PVISDDEQII  180
SSNSGSAEDH PQAMPSGSGG ASASGDTGEE NERLRRENAR LTRELGQMKK LCNNILLLMT  240
KYASSQQLDG SAALSSVVNC SGESSEALPP PPPLPTAILD LMPSCPGLAT AAAGLVTETD  300
PEQAARLFGV SIGLKRTRED DDAGEEPADH GGAGAEVKTE ASDPHQHPGS SSKEASPDQH  360
SWPIYRPTPV YHSMRPCNGP DQGARSDHDG SNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-264313210110Heat shock factor protein 1
5hdn_A4e-264313210110Heat shock factor protein 1
5hdn_B4e-264313210110Heat shock factor protein 1
5hdn_C4e-264313210110Heat shock factor protein 1
5hdn_D4e-264313210110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018433.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957414.10.0heat stress transcription factor B-2c isoform X2
SwissprotQ652B01e-156HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A1E5V3Q70.0A0A1E5V3Q7_9POAL; Heat stress transcription factor B-2c
STRINGSi030094m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-60HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]