PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018316.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 636aa    MW: 67882 Da    PI: 7.6043
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018316.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29404460259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+ k++e prsYY+Ct  gCpvkk vers  d+ ++eitY+g+Hnh+
  Do018316.1 404 KDGYSWRKYGQKQLKDAESPRSYYKCTRDGCPVKKVVERSF-DGFITEITYKGRHNHP 460
                 8****************************************.***************8 PP
2WRKY101.55e-32538595259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v+k++er+++dp++v +tY+g+Hnh+
  Do018316.1 538 DDGYRWRKYGQKVVKGNPRPRSYYKCTADNCNVRKQIERASTDPRCVLTTYTGRHNHH 595
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF508142.71E-661168IPR011038Calycin-like
Gene3DG3DSA:2.40.128.201.2E-10104169IPR012674Calycin
PROSITE profilePS5081123.169398462IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-27400462IPR003657WRKY domain
SuperFamilySSF1182901.11E-23402462IPR003657WRKY domain
SMARTSM007744.9E-32403461IPR003657WRKY domain
PfamPF031065.4E-23404460IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-33522597IPR003657WRKY domain
SuperFamilySSF1182902.22E-27530597IPR003657WRKY domain
PROSITE profilePS5081134.75532597IPR003657WRKY domain
SMARTSM007743.2E-34537596IPR003657WRKY domain
PfamPF031061.2E-23538595IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAEALLGLRV AACSVPQPQS HRGRLLPAAR LASIRRGRLC TTRAAVAGPP EVDEDEAVSI  60
DNLHRFFDLN VGKWDGSFYI GFFPEEKAFS LRYQTAGMLE TVLRVGVLGE DDTGEESPKN  120
LKIPSRKASI VCENCLYSLE GNGRVRAFHI MDPKGVLDTL LVFHERQGSV VPQPLVHSPV  180
GTKPRYFSGR PPSLSLASRA VFLGLSGEAR KVAAMEDRRG RGDAMRQRPF ASAAQGQERV  240
FDGGGGGAGP GPAAFGSDFD QGSSLMALLG AGGVSSSQPP PPAWGVEEVT AASAINLVPQ  300
SFSMANYAPP APSYQQPTSF APSPLGGRMD PYPPYLLGDP PPQWPPPRST PAASSLPPSN  360
FTVLLPRAPY DQDMQLHAAG LFGVGSSHPH ALLPPAAAIE QPAKDGYSWR KYGQKQLKDA  420
ESPRSYYKCT RDGCPVKKVV ERSFDGFITE ITYKGRHNHP RPQERGHAGG GNDALAAAAA  480
AEEEDVEGPS DDDDDALHEN DVVDGAPGMG GDGDASGQRV VKKPKIIIQT PSEVDLIDDG  540
YRWRKYGQKV VKGNPRPRSY YKCTADNCNV RKQIERASTD PRCVLTTYTG RHNHHPPGRG  600
ADAAAGSSAG HPAPSSAGGS GTFQQTGGAR QLKEES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A2e-396421696252BFA1
5yvf_B2e-396421696252BFA1
5yvf_C2e-396421696252BFA1
5yvf_D2e-396421696252BFA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9618221e-99EU961822.1 Zea mays clone 238426 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402538.10.0probable WRKY transcription factor 26
TrEMBLA0A1E5VEH50.0A0A1E5VEH5_9POAL; Putative WRKY transcription factor 58
STRINGGRMZM2G008029_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-54WRKY DNA-binding protein 58