PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018235.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 364aa    MW: 38804.3 Da    PI: 4.5415
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018235.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-4991331128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtd+elv++yL +k+ g +l +  vi+evd+yk++Pw+Lp+k+ ++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s   ++
  Do018235.1   9 LPPGFRFHPTDDELVNCYLLPKCGGLPLAA-PVIAEVDLYKFDPWSLPEKAVGGEKEWYFFSPRDRKYPNGSRPNRAAGAGYWKATGADKPVGS--PRT 104
                 79*************************999.89***************8888899*************************************99..678 PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 v +kk Lvfy g+ pkg+kt+W+mheyrl
  Do018235.1 105 VAIKKALVFYAGKPPKGVKTNWIMHEYRL 133
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-605163IPR003441NAC domain
PROSITE profilePS5100558.1269163IPR003441NAC domain
PfamPF023651.1E-2510133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDFGGALQLP PGFRFHPTDD ELVNCYLLPK CGGLPLAAPV IAEVDLYKFD PWSLPEKAVG  60
GEKEWYFFSP RDRKYPNGSR PNRAAGAGYW KATGADKPVG SPRTVAIKKA LVFYAGKPPK  120
GVKTNWIMHE YRLADVDRSA AARKKTNNAL RLDDWVLCRI YNKKGVIERY DTVDDDEDAA  180
TAAVDDVKPA AGAKNPRGAA GACGGRGGAA PMKVEMADYG GYYDDYDMET PSAGMLCFER  240
PGEAVVPVPA PAPALSLSPA TDPEPDGDSN SMPWMHTDNS SCGSEHVLSP SPDQPDRDDA  300
ESQLGGGGGA GWWSGGDWGG AADDGFVVLE QLDFGPPSPG LFSRVDAAAA AAFGDMFAYL  360
NKPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-7421698174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018235.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924081e-180FP092408.1 Phyllostachys edulis cDNA clone: bphylf024g16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827492.11e-168NAC domain-containing protein 71-like
SwissprotQ53NF71e-143NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLA0A1E5W6T00.0A0A1E5W6T0_9POAL; NAC domain-containing protein 71
STRINGPavir.Ha00897.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-92NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]