PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do017868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bZIP | ||||||||
Protein Properties | Length: 154aa MW: 17119.2 Da PI: 7.7886 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.7 | 7.8e-16 | 28 | 87 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++ + ++a++++e+ Do017868.1 28 HRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAGRAADIASQYARVEQEN 87 58****************************************************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.7E-12 | 22 | 72 | No hit | No description |
SMART | SM00338 | 2.5E-17 | 25 | 89 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.151 | 27 | 90 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-12 | 28 | 87 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.91E-10 | 29 | 77 | No hit | No description |
CDD | cd14702 | 9.61E-16 | 30 | 81 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 32 | 47 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006971 | Biological Process | hypotonic response | ||||
GO:0009267 | Biological Process | cellular response to starvation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000693 | Biological Process | positive regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MSSSSLSPSL SPAGRMSGSD GDSPADTHRR EKRRLSNRES ARRSRLRKQQ HLDELVQEVA 60 RLQAENARVA GRAADIASQY ARVEQENTVL RARAAELGDR LRSVNEVLRV VEEFSGVAMD 120 IQEEMPADDP LLRPWQLPYP AAAMPIGGAH MLQY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 47 | RRSRLRK |
2 | 41 | 48 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00419 | DAP | Transfer from AT3G62420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do017868.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034289 | 1e-176 | BT034289.1 Zea mays full-length cDNA clone ZM_BFc0009B07 mRNA, complete cds. | |||
GenBank | BT088408 | 1e-176 | BT088408.1 Zea mays full-length cDNA clone ZM_BFc0179N23 mRNA, complete cds. | |||
GenBank | EU964736 | 1e-176 | EU964736.1 Zea mays clone 281235 ocs element-binding factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808697.1 | 2e-97 | ocs element-binding factor 1 | ||||
Swissprot | P24068 | 1e-94 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | A0A1E5VDU6 | 1e-105 | A0A1E5VDU6_9POAL; Ocs element-binding factor 1 | ||||
STRING | Pavir.Cb00560.1.p | 1e-98 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1886 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 4e-33 | basic region/leucine zipper motif 53 |
Publications ? help Back to Top | |||
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