PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do017860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 38589.6 Da PI: 8.5436 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.5 | 6.3e-54 | 22 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL +k+ + ++ ++i+e+d++k+ePw+Lp k+k +ekewyf+s rd+ky+tg r+nrat +gyWkatgkd+e+ s +g+ Do017860.1 22 LPPGFRFHPTDEELITYYLLRKAVDASFCG-RAIAEIDLNKCEPWELPDKAKMGEKEWYFYSLRDRKYPTGLRTNRATVAGYWKATGKDREIRSGrTGA 119 79*************************888.88***************99999****************************************976788 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkg+kt+Wvmheyrle Do017860.1 120 LVGMKKTLVFYRGRAPKGQKTHWVMHEYRLE 150 8****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-60 | 21 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.702 | 22 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-27 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048504 | Biological Process | regulation of timing of organ formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MERFGVLGTR LGLDGGGGGG ELPPGFRFHP TDEELITYYL LRKAVDASFC GRAIAEIDLN 60 KCEPWELPDK AKMGEKEWYF YSLRDRKYPT GLRTNRATVA GYWKATGKDR EIRSGRTGAL 120 VGMKKTLVFY RGRAPKGQKT HWVMHEYRLE GTYAYHYLPN STRDEWVIAR VFQKPGEVPP 180 ARKHRLCLSS AGGESCFSDS TSASIGGGGG ASASSAPRPL LTDASSLFAA AAANADGDTS 240 SYCGTASANG NSTLVTGREL VPCFSTTTGP LDAALGIGQP YNPAPLAFEP PPAFFPNLRS 300 LQDNLQLPLF LSGGLSAGGS TLGPLGGGGI HWPAGMEVKV EGRAAPQMAV GPGQLDGAFG 360 WGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-52 | 22 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-52 | 22 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-52 | 22 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-52 | 22 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-52 | 22 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-52 | 22 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-52 | 22 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-52 | 22 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-52 | 22 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-52 | 22 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-52 | 22 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-52 | 22 | 174 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-52 | 22 | 174 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-52 | 22 | 174 | 17 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00562 | DAP | Transfer from AT5G53950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do017860.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970442 | 0.0 | EU970442.1 Zea mays clone 345601 CUC2 mRNA, complete cds. | |||
GenBank | KJ727847 | 0.0 | KJ727847.1 Zea mays clone pUT5891 NAC transcription factor (NAC119) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812735.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1-like | ||||
Swissprot | O04017 | 5e-95 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A1E5VWM4 | 0.0 | A0A1E5VWM4_9POAL; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | Si007886m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9940 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-86 | NAC family protein |